Scaffold Ga0210410_10000206

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000206
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83266
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F008273	Metagenome / Metatranscriptome	336	Y
F016585	Metagenome / Metatranscriptome	246	Y
F045878	Metagenome / Metatranscriptome	152	Y
F063512	Metagenome	129	Y
F097751	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000020642	F063512	N/A	MRLAKIIFATLFSVAGTNCFAQTPTANPNTKISLTSFRTLAQSCAANVPVSTLEAIARTESAL
Ga0210410_1000020647	F008273	GGAGG	MKSNNGATRQDVVVNSVDHQVSGLTNSAASTGQLETLLISELDHDLIAWPRQYLETYLDSDATGRVPLDAEQLQDILEAAFDRDAALAREYLEELNGERRPKTLGDTTLQIAIARTEREKIEYELLFDPADSQDLRYLIEKLDIRAQERHKAQSTPALETQSDTERRETTTTVTVHQPGSGAVELHDKTTGTDVRKLLGGGELPRGLQSALTLRAADARVEHAQTDSGTYRGRIIADTEKNLVQQINSHTAVIHRKELLDMIPTIGENVRVAYSYDHARVLPVRERTRKQELER
Ga0210410_1000020652	F000673	GAG	VATFAGNVARMCHIRKSGQGMGKPRTERSLLFPSEEFRERVRNTAKVRGFRSEQAFILAACENEIRRGEHTEATEQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRATLKGMVADD
Ga0210410_1000020653	F045878	GAG	MSTQKHYRRCLERLAADPPKRRAALIRTLLPEIEAAVTSGRNLKDIWEALQSEGLEVCYHTFYLVVWRARKKPTPASGLGKHEEAPAAQGSMETKVAAVEDRDPFANLKRLEENRPGFHWRSTRNAKTSVNEREDFSDKHNR
Ga0210410_1000020656	F097751	GAGG	MRSWLAMLFYIDHKCTTQPGFRKTFLVLILVFVFLLWSPWRPLLCPVFGVCPAPVVRADASTESKSQGPHLKRFKRLASTPAPVQIVPESSVQSSARP
Ga0210410_1000020662	F016585	GAGG	MENSTQPTGMESPHGASRLWSVLFVTAAAMVAVAALCLLPEVRISKTRLPEEVRVELVVLVMALGFSGVLMGTLLNLPRPLKRTAAVLFATALLCSGFVALVGWFAVSGASSRWF
Ga0210410_1000020673	F000321	AGGA	VAKRRSANFAVYNVRLLSALDKLLRDKPRYMGELSTAINDALLAVDMNTVELVNLQSRQKQTGRETQVVILKRLRERIHQVAKKRKCSMNQLVNSALLAYYSKTGDAKLKRPIKGQRVAMPTYDTMSDLERRELDQLLSGLAGMQAVAADVEEPDGTYYEYDRNLKTTVKVTPDGERTPVAQLEAQFDRPPHKGSHKTAHEGMTP