Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000127 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	115085
Total Scaffold Genes	117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (79.49%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

115085

Total Scaffold Genes

117 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

93 (79.49%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F002681	Metagenome / Metatranscriptome	537	Y
F003829	Metagenome / Metatranscriptome	466	Y
F049800	Metagenome / Metatranscriptome	146	Y
F056877	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000012748	F049800	GAG	MATRHPLPGMRWLFWLRNASLRNGVLTGVYLSCVFVSWLYVANRVKELEPFAGIRNVAAGAAVILIMSIPLLRFRREPVRIFVSGLTAWTLLTLTYMAMEMNFSLLESRMGAFHVFMLGAMTYGFVAVFHWVFLLCVEARHRHVAQSEHGSVSASRPHLH
Ga0210410_1000012755	F002681	N/A	MNPRKSTQWLGAYLFGLCLYQIGIYFWPGGPPFILDPRAGIPVLLINHFSFDNKVIYPVEWITAAWLVLMAAMIFFRGKLLKTYLISELVLAAPTAYYIGVLAIQHGGHFAPAFNDLLLTIFLFCVFSAVPVGLAARKIARLPVRSSGTPG
Ga0210410_1000012762	F000173	GGAGG	MKTFEVQLRYRDRNEESVEATVKVDASSLPGAVAKAAREFVKGLDRKQRFDMNKNGLEITAKLVNSATEAKVETSSGATAR
Ga0210410_1000012764	F056877	GGAG	MGLMMQTQQDIRSTLQTNFPEGSRILIVCDDDCDTRQLRTLLLEAGFPVDCAKSLRAGCEAAKSGQFQVVISTPLLKDGSWRRLTDIANHSDLRFEVVLWARSFDLREWAEALENGAFDVLDAVYEKPRVVEAVKGALWAAYLKGAWPRPKASRPSRVA
Ga0210410_1000012794	F003829	AGGAGG	MNPLTQTQVRIGEDMNRSGAPLKVPEGARILIVCDDNSDTDRLKKILLEEGFVTEWAKSITAGCAAAKSGQFQVVVSTPVLSDGSWRRLTDIASHYDLGFEIILWARNFDLREWALALNEGVFDVLDSMCEQPKAVEATKRALWSAYLKGAGPNPKAAIPQKAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000127

Overview

Ecosystem & Geography

Associated Families

Sequences