NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000049

Scaffold Ga0210410_10000049


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000049 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)201250
Total Scaffold Genes194 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)155 (79.90%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000536Metagenome / Metatranscriptome1044Y
F000624Metagenome / Metatranscriptome977Y
F000696Metagenome / Metatranscriptome931Y
F000703Metagenome / Metatranscriptome928Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F001916Metagenome / Metatranscriptome617Y
F002853Metagenome / Metatranscriptome526Y
F003970Metagenome / Metatranscriptome459Y
F006229Metagenome / Metatranscriptome378Y
F006480Metagenome / Metatranscriptome372Y
F015239Metagenome / Metatranscriptome256Y
F047786Metagenome / Metatranscriptome149Y
F070523Metagenome / Metatranscriptome123Y
F076450Metagenome118N
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000049102F076450N/AMRNDPQGRAIQIGRYLSAPAVLNVGTASTSVQLNQNRHYRLWPSVDMFFQFGASGVSATTNSHPATGKLDYLHYTDDTNTTLAAVVSAGTGVLFISELDTQGV
Ga0210410_10000049109F000885GGAGGMANAKLNFIGEVTQIAGVAAIVAGVVLSMHHWPAAVALIGGGAALYVGKKLRAQ
Ga0210410_10000049115F006480N/AMKRLFIGGIGLLLCGGLFARSKTDPLMFVFLRVDREHDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCASSIREHDAIVETKIAKVTDLVLDCGDHKFVVKTIDFNPRSK
Ga0210410_10000049118F000739N/AMNRVEIWLKGILAAAISGGAGGILTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGIAAYLQKSPLPQDGV
Ga0210410_10000049119F070523AGGAVKSDKVSLLPDERVAIHAQLGSILKGGDPAEVLLVIILLLALRPPSRRKAQKKKGQPKLP
Ga0210410_10000049120F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAMTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVAAAIRREQQSARRRRPFSARSGYTPF
Ga0210410_10000049127F006229GAGGMSIETSTNTTTVSLVNISTEKWPPRHRTYFGSLQVRSPEPGEPFAITPIRGCTAVMDLGDRRTHDIHLTAREIAEDIAREINGDSGEGSFHGVFVAAGELPTGAELSDACRRLEEFQRKLVNAADLEWERTKNPMFITDLERRAARQLGVEKPWLYDPKPQADCPVCAEKIKPGVAVCRSCGAILDREKAAQYGLGTPRRARRDRSDARAEADGAGKQEPEPEVEPLAEAKP
Ga0210410_10000049131F000781GGAMLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPTPVASISVQASNGWFDISITDPSDARPGLFYFAESDTTPAFGAPRVYFMGASRNLYAQLGNQTLYWRAYSQYVGSLPSAPVTFGAPPIAVAGGGSTGPAPLPSSGSGVFPNGVPRGGNGFGINPGSRIVRQTIL
Ga0210410_10000049132F000703N/AMLVREYQERDLDALRAIHAAQGFDYKLPDLSNPLFVTKLVLTDDNAETKNEDRQLGVGATSARGNEPEGNGPILGAAFLRLTAEAYLLLDPKAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRIARLGWLRDDSWTPYCHKLTAHQQR
Ga0210410_10000049133F099605AGGAGMPTTNNTASWDFNPNDPVNLSASFIFDTEDTQDSAPVAAALAAIQARLSHATATATQPDGATISITVTI
Ga0210410_10000049134F002853GGAGGMSRAQDYTRQLTDQQLASLNSMNQQFLGQQQQVGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQMAFTNTAFQRQMAALQGLSGLFGMDSNLLGRTLGIPAELLNTRANASRGAGGGFFSALGSGVGSTLGALPGAFF
Ga0210410_10000049135F000624AGGAMPIHWFGVLAAVASAGVQFVLFLRWLHRRMRNDEIVSVFVRDIAAIHLPHIYTALHEIGKRQGIELPETPMVRFVDLNGNRRSR
Ga0210410_10000049151F015239GGAGGMKNLDSVLAAYLAGWAIFFVYYVSVAQRMSTLREEVERLKSLLTKGK
Ga0210410_1000004916F001916AGGAGGLFSDHLITIAGRSITITSHDMLMMLVSVATGLLFWTALYFSRKRVVVLKRSSGTDQVTLELSRIADALERIANRTADDAIAAASRRQQQIQPPPQRESKGVAYSMLGR
Ga0210410_1000004945F047786GAGMNTDFKVGDVVRHKPDGQDTIIIRFEDESVDGVTKKIAVCGRFEGQNFHQETIPVEMLEFVNRWLAAGS
Ga0210410_1000004962F003970GGAGGLLSDHIISILGRTITFTSQEELLAIVAIAVLATVWAVQLFRRKRTVVVQRSAVSDQMLYELSRIADALERIANRPADEAIAASSRRLVEKPRANPLSIFGRERPQG
Ga0210410_1000004989F000536N/AMVELSPQQIQVVERLFAAGFRPIVIPPYENVLCMRKGDCAAVLAPVPNGGLKLLAPPSYLVDGNLSVKIERGSGEVFVWKKREVAATPEKLQELDSFRRELSEILDLPPRQ
Ga0210410_1000004995F000188GGAGGMGVKPELAFDVCWEIYRGAREVLETKRGISALNWKDTAKFLWRPDFRPRLNEWVADFALAGQAALDGPDWASRMVMFRLYYLGLAPYENARHFLGLSEHSWVNWSEQIRRRCGKELLSRGMFPPRKYFSGQL
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