NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10067014

Scaffold Ga0210402_10067014


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10067014 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F059558Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_100670141F059558N/APLRAGKQKLIRSIKVEVKKKHFSFGWNFSCFAAHLIEQDLF
Ga0210402_100670143F000131AGGAGMKNAQGNAHVVNRFMAGLSLILMMGIGIRNTEAQELSLQAVVTPSTVVLEDGKTVTFGIHGFIEFRSLGEVFPYIEVETRRWNGKISDEEKRQLAWQLLREGIESRVISMADERPLEALVTHTSEELRQAIARVKEPLPAGYAEAFVAVQEKWKHSLNCWSASPVIAGRVLSNWYPIEEGIRLHGAVYDSTEHFWQAVKYHPDTTVAELRELIVRLEGRTWSEWIKRLDDDPKIYLPNAYAVEFLRDNLRGERLKWFAAELEKHELKPGDRARMVQQRGESAFRFSAVEEKVLWGDLADLLHMIYVFSPADDSIRKALVVHHFDGIYLGDRKMGFISEEFRSEMLEIWKVKFLEMARFREVIAGIPVETRLEHFLNDGDSPDIPIPIYVGYLNQIRQMARERK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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