NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000078

Scaffold Ga0210402_10000078


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000078 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104092
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (79.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000260Metagenome / Metatranscriptome1431Y
F067992Metagenome / Metatranscriptome125Y
F077524Metagenome / Metatranscriptome117Y
F101737Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000007828F000078AGGAGLEIQYCLRCSRELAAGQKYAAVYMFSQTVGIKPRQKSSAQRICFCPQCSVSLAMGPPPEGALNLAAWQMIRDLVGSDPALTEAAWENLSGVAGLLPGNVLAPTGTESRRAAAGGYFEF
Ga0210402_1000007846F077524GGAGMVGRRNETEYDLYSAITFLLVGLGIGSLLAIVFNPKLRDTPAGIDRWRTSELQTRREAEERVA
Ga0210402_1000007849F000260GGAGGMNSKMKFALGVLTALAMLALTYLVPRGNALRDAQLVQFPVTVGIWAIFVLLFVKLK
Ga0210402_1000007878F067992GGAGLFEELEKIELAEDVFGTDLPVDLAFDNPRELVDYLVLHLRGWGPKPFAADFLKKLAETHNTPALAQGLHDSWRREQISAIIQEIFNTGDSRAGGDDEAVIPVRKPRNPKSGDDAAAQSLDEDNQSASR
Ga0210402_1000007888F101737AGGAMATKTGNWIMVGGALIVFAGLCFLPAAFGADGDRTMLGAGFVVMSSGLLGIAAGFYMKARALGSAATTTGAPASPKRNRNKGTCDRCVQEEPVIQCRVHQLHLCADCLGKHYDFRSCAYVPSTRRGAPMKSGAAAYSQSASN
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