Metagenome / Metatranscriptome Family F077524

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077524
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	64 residues
Representative Sequence	MEGATNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRTAPEEINSWRMSELRPRREAEERVA
Number of Associated Samples	90
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.07 %
% of genes near scaffold ends (potentially truncated)	23.08 %
% of genes from short scaffolds (< 2000 bps)	62.39 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.051 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (24.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.248 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.74% β-sheet: 0.00% Coil/Unstructured: 36.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF08308	PEGA	23.08
PF00072	Response_reg	16.24
PF04966	OprB	2.56
PF00578	AhpC-TSA	1.71
PF13460	NAD_binding_10	1.71
PF03453	MoeA_N	1.71
PF00437	T2SSE	1.71
PF01058	Oxidored_q6	0.85
PF14014	DUF4230	0.85
PF14791	DNA_pol_B_thumb	0.85
PF07730	HisKA_3	0.85
PF07690	MFS_1	0.85
PF04366	Ysc84	0.85
PF07963	N_methyl	0.85
PF13193	AMP-binding_C	0.85
PF00723	Glyco_hydro_15	0.85
PF12867	DinB_2	0.85
PF01935	DUF87	0.85
PF12833	HTH_18	0.85
PF07676	PD40	0.85
PF12706	Lactamase_B_2	0.85
PF00005	ABC_tran	0.85
PF00589	Phage_integrase	0.85
PF01740	STAS	0.85
PF02880	PGM_PMM_III	0.85
PF13620	CarboxypepD_reg	0.85
PF13545	HTH_Crp_2	0.85
PF03551	PadR	0.85
PF13548	DUF4126	0.85
PF13432	TPR_16	0.85
PF13338	AbiEi_4	0.85
PF01434	Peptidase_M41	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	2.56
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	1.71
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.85
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.85
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.85
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.85
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.85
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.85
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.85
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.85
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.10 %
Unclassified	root	N/A	17.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	47.86 %
Unclassified	root	N/A	17.95 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.86 %
Unclassified	root	N/A	17.95 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.86 %
Unclassified	root	N/A	17.95 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.86 %
Unclassified	root	N/A	17.95 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.86 %
Unclassified	root	N/A	17.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10033057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2995	Open in IMG/M
3300001175\|JGI12649J13570_1033210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300001593\|JGI12635J15846_10015559	All Organisms → cellular organisms → Bacteria	6328	Open in IMG/M
3300004080\|Ga0062385_10197291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300004082\|Ga0062384_100055849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1936	Open in IMG/M
3300004091\|Ga0062387_101673181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300004092\|Ga0062389_104570586	Not Available	521	Open in IMG/M
3300005445\|Ga0070708_100213926	All Organisms → cellular organisms → Bacteria	1806	Open in IMG/M
3300005468\|Ga0070707_100109507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2679	Open in IMG/M
3300005468\|Ga0070707_100133493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2414	Open in IMG/M
3300005534\|Ga0070735_10216272	All Organisms → cellular organisms → Bacteria → Acidobacteria	1169	Open in IMG/M
3300005536\|Ga0070697_100407489	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300005538\|Ga0070731_10000071	All Organisms → cellular organisms → Bacteria	203484	Open in IMG/M
3300005541\|Ga0070733_10180757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1376	Open in IMG/M
3300005542\|Ga0070732_10861248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300005712\|Ga0070764_10003340	All Organisms → cellular organisms → Bacteria → Acidobacteria	7415	Open in IMG/M
3300005921\|Ga0070766_10289816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300006052\|Ga0075029_100761854	Not Available	656	Open in IMG/M
3300006086\|Ga0075019_10996298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300006162\|Ga0075030_100243333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1443	Open in IMG/M
3300006176\|Ga0070765_100836552	Not Available	870	Open in IMG/M
3300006893\|Ga0073928_10634368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300009038\|Ga0099829_10228785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1512	Open in IMG/M
3300009038\|Ga0099829_11174277	Not Available	636	Open in IMG/M
3300009088\|Ga0099830_10039405	All Organisms → cellular organisms → Bacteria	3263	Open in IMG/M
3300009088\|Ga0099830_11708710	Not Available	525	Open in IMG/M
3300009521\|Ga0116222_1242398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300009522\|Ga0116218_1116546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1215	Open in IMG/M
3300009824\|Ga0116219_10564062	Not Available	627	Open in IMG/M
3300010154\|Ga0127503_10765563	Not Available	514	Open in IMG/M
3300010379\|Ga0136449_100078657	All Organisms → cellular organisms → Bacteria → Acidobacteria	6977	Open in IMG/M
3300010379\|Ga0136449_101188049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1203	Open in IMG/M
3300011270\|Ga0137391_11316086	Not Available	569	Open in IMG/M
3300012189\|Ga0137388_10038950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3770	Open in IMG/M
3300012199\|Ga0137383_11312562	Not Available	515	Open in IMG/M
3300012205\|Ga0137362_10431906	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300012362\|Ga0137361_10977368	Not Available	766	Open in IMG/M
3300012363\|Ga0137390_10026316	All Organisms → cellular organisms → Bacteria	5481	Open in IMG/M
3300012923\|Ga0137359_10558842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300012929\|Ga0137404_10067752	All Organisms → cellular organisms → Bacteria → Acidobacteria	2790	Open in IMG/M
3300014164\|Ga0181532_10004998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11389	Open in IMG/M
3300014164\|Ga0181532_10035445	All Organisms → cellular organisms → Bacteria	3412	Open in IMG/M
3300014489\|Ga0182018_10032076	All Organisms → cellular organisms → Bacteria → Acidobacteria	3329	Open in IMG/M
3300014489\|Ga0182018_10061254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2272	Open in IMG/M
3300014495\|Ga0182015_10009193	All Organisms → cellular organisms → Bacteria	9243	Open in IMG/M
3300017972\|Ga0187781_10314124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1112	Open in IMG/M
3300018085\|Ga0187772_11275665	Not Available	543	Open in IMG/M
3300020579\|Ga0210407_10000884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	30481	Open in IMG/M
3300020579\|Ga0210407_10012271	All Organisms → cellular organisms → Bacteria	6372	Open in IMG/M
3300020579\|Ga0210407_10882910	Not Available	686	Open in IMG/M
3300020580\|Ga0210403_10010705	All Organisms → cellular organisms → Bacteria → Proteobacteria	7457	Open in IMG/M
3300020580\|Ga0210403_10660030	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300020581\|Ga0210399_10037158	All Organisms → cellular organisms → Bacteria → Acidobacteria	3896	Open in IMG/M
3300021407\|Ga0210383_10010087	All Organisms → cellular organisms → Bacteria → Acidobacteria	8067	Open in IMG/M
3300021407\|Ga0210383_10499979	Not Available	1050	Open in IMG/M
3300021420\|Ga0210394_10000177	All Organisms → cellular organisms → Bacteria	154079	Open in IMG/M
3300021420\|Ga0210394_10002932	All Organisms → cellular organisms → Bacteria → Acidobacteria	22445	Open in IMG/M
3300021420\|Ga0210394_11210650	Not Available	648	Open in IMG/M
3300021432\|Ga0210384_10000544	All Organisms → cellular organisms → Bacteria	57293	Open in IMG/M
3300021432\|Ga0210384_10000595	All Organisms → cellular organisms → Bacteria → Acidobacteria	54781	Open in IMG/M
3300021432\|Ga0210384_10076553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3009	Open in IMG/M
3300021432\|Ga0210384_11257256	Not Available	645	Open in IMG/M
3300021477\|Ga0210398_10120933	All Organisms → cellular organisms → Bacteria → Acidobacteria	2128	Open in IMG/M
3300021478\|Ga0210402_10000078	All Organisms → cellular organisms → Bacteria	104092	Open in IMG/M
3300021478\|Ga0210402_10306960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1469	Open in IMG/M
3300021478\|Ga0210402_11712569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300021479\|Ga0210410_10100563	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300021479\|Ga0210410_10118662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2344	Open in IMG/M
3300021559\|Ga0210409_10504033	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300022522\|Ga0242659_1079716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300022557\|Ga0212123_10666924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300022709\|Ga0222756_1040087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300025922\|Ga0207646_10054054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3593	Open in IMG/M
3300026360\|Ga0257173_1056770	Not Available	562	Open in IMG/M
3300026469\|Ga0257169_1082544	Not Available	526	Open in IMG/M
3300026551\|Ga0209648_10379492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300027590\|Ga0209116_1089295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300027641\|Ga0208827_1056438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1291	Open in IMG/M
3300027676\|Ga0209333_1000047	All Organisms → cellular organisms → Bacteria	64084	Open in IMG/M
3300027692\|Ga0209530_1202295	Not Available	547	Open in IMG/M
3300027698\|Ga0209446_1097872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300027745\|Ga0209908_10000006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9821	Open in IMG/M
3300027783\|Ga0209448_10258342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300027862\|Ga0209701_10045219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2838	Open in IMG/M
3300027879\|Ga0209169_10011044	All Organisms → cellular organisms → Bacteria → Acidobacteria	5047	Open in IMG/M
3300027905\|Ga0209415_10450645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300027911\|Ga0209698_10035597	All Organisms → cellular organisms → Bacteria → Acidobacteria	4507	Open in IMG/M
3300027911\|Ga0209698_10243431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1439	Open in IMG/M
3300028759\|Ga0302224_10300571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300028780\|Ga0302225_10090727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1497	Open in IMG/M
3300029910\|Ga0311369_10095811	All Organisms → cellular organisms → Bacteria → Acidobacteria	3010	Open in IMG/M
3300029943\|Ga0311340_10774866	Not Available	812	Open in IMG/M
3300030007\|Ga0311338_10342514	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300030007\|Ga0311338_10681967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1042	Open in IMG/M
3300030007\|Ga0311338_11094148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300030007\|Ga0311338_11188790	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300030054\|Ga0302182_10257474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300030503\|Ga0311370_10070538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5053	Open in IMG/M
3300030509\|Ga0302183_10285396	Not Available	639	Open in IMG/M
3300030520\|Ga0311372_11145833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300030618\|Ga0311354_10188781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2214	Open in IMG/M
3300030659\|Ga0316363_10009629	All Organisms → cellular organisms → Bacteria	5854	Open in IMG/M
3300031028\|Ga0302180_10008306	All Organisms → cellular organisms → Bacteria → Proteobacteria	7273	Open in IMG/M
3300031090\|Ga0265760_10036314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1461	Open in IMG/M
3300031234\|Ga0302325_10002207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	47732	Open in IMG/M
3300031234\|Ga0302325_11520358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300031590\|Ga0307483_1034282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300031708\|Ga0310686_110294774	Not Available	523	Open in IMG/M
3300031753\|Ga0307477_10556732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300031754\|Ga0307475_10326868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300031866\|Ga0316049_109966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300032160\|Ga0311301_10017125	All Organisms → cellular organisms → Bacteria	21183	Open in IMG/M
3300032160\|Ga0311301_10422274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2027	Open in IMG/M
3300032160\|Ga0311301_10796303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1300	Open in IMG/M
3300032515\|Ga0348332_10950647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120	Open in IMG/M
3300032515\|Ga0348332_11583696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300032515\|Ga0348332_13365214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1198	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.32%
Aquatic	Environmental → Aquatic	13.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.09%
Peat	Environmental → Terrestrial → Peat	13.68%
Freshwater	Environmental → Aquatic → Freshwater	7.69%
Sediment	Environmental → Aquatic → Sediment	4.27%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.68%
Loam	Environmental → Terrestrial → Soil → Loam	11.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.27%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.56%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.27%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.42%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.56%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.22%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	13.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.26%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.13%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.56%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.71%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.71%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100330573	3300000567	Peatlands Soil	MEGATNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRTAPEEINSWRMSELRPRREAEERVA*
JGI12649J13570_10332102	3300001175	Forest Soil	EVLMESAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEINSWRMSGLRPRREAEERVA*
JGI12635J15846_100155595	3300001593	Forest Soil	MESAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEINSWRMSGLRPRREAEERVA*
Ga0062385_101972912	3300004080	Bog Forest Soil	MEGALNESEYDLYSAITFLLVGLGIGSVLAIAFNPKQRVAPEGINSWGNSGLQSRTEAEERAA*
Ga0062384_1000558491	3300004082	Bog Forest Soil	MEGATNKYDLSSAITFLLVGLGIGLILAVVFNPKQRAVPERINSRRMSGLQPRREAEAEVRAG*
Ga0062387_1016731812	3300004091	Bog Forest Soil	SAITFLLVGLGIGLILAVVFNPKQRAVPERINSRRMSGLQPRREAEAEVRAG*
Ga0062389_1045705861	3300004092	Bog Forest Soil	MEGARKKSEYDLNSAITFLLVGLGIGSVLSMLFNPKLRGAPEEINSWRRSGLRPRREAEERVA*
Ga0070708_1002139262	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEGARNESGYDVYSAITFLLVGLGIGSLLAMVFNPKQRIATEGINSWRTSGLRPQTKAEKRVA*
Ga0070707_1001095073	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSRRTSGLQPRREAQERVA*
Ga0070707_1001334932	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MESARNESGYDLYSAITFLLVGLGIGSLLAMVFNPKQRIATEGINSWRTSGLRPQTKAEKRVA*
Ga0070735_102162721	3300005534	Surface Soil	MEGATKKSQYDLNSAITFLLVGLGIGSILAIVFDPKQRDIPEEINSGGTSELRPRREAAEGAA*
Ga0070697_1004074891	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MERGLMEGARNESGYDVYSAITFLLVGLGIGSLLAMVFNPKQRIATEGINSWRTSGLRPQTKAEKRVA*
Ga0070731_1000007117	3300005538	Surface Soil	MKDAKNKSEYDLNSAITFLMVGLGIGSVLALVFNPKQREEIDRGRRSEFRLRREEERVA*
Ga0070733_101807572	3300005541	Surface Soil	MRSEYDLSSAVTFLLVGLGIGSVLAIVFNPGQLGALERINRRRAPQMQSKEDANEQTA*
Ga0070732_108612481	3300005542	Surface Soil	MEGATKKSGYDLNSAITFLLVGLGIGSILAVVLNPKQRTAPEEINRWRMAEVQPRREAEERAA*
Ga0070764_100033402	3300005712	Soil	MQGTTNNYDLPSAVTFLLVGLGIGSILALVFNPKQKAASEGINRRRISELQPRREAGAWERVA*
Ga0070766_102898162	3300005921	Soil	VKSEYDLHSAITFLLVGLGIGSVLATVFKPKQRVPRDGTERIKGVNSWRTVGLQPQGKPKERIA*
Ga0075029_1007618542	3300006052	Watersheds	MESATNEYDFNSAVTFLLVGLGIGSVLAIVFKPKQGVALGAAKDANEWRTDGLQPQEEARD*
Ga0075019_109962981	3300006086	Watersheds	MEGATNESEYDLYSAITFLLVGLGIGSVLAIVFNPKQRVAPEGINSWRMSGLQSRTEAEVRAA*
Ga0075030_1002433333	3300006162	Watersheds	MEGATNESEYDLYSAITFLLVGLGIGSVLAIVFNPKQRVAPEGINSWRMSGLQSRTEAEERAA*
Ga0070765_1008365521	3300006176	Soil	DLPSAVTFLLVGLGIGSILALVFNPKQRAAPQGINRRRISELQPRREAGAWERAA*
Ga0073928_106343682	3300006893	Iron-Sulfur Acid Spring	RILQRAHGSEVLMEGATNKSKYELNSAITFLLVGLGIGSVLSILFNPKQKRGAPEEINSWRMSGLRPRREAEERVA*
Ga0099829_102287852	3300009038	Vadose Zone Soil	MEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSWRTSGLQPRREAQERVA*
Ga0099829_111742771	3300009038	Vadose Zone Soil	MQGATNKSEYDLNSAITFLLLGLGIGSVLALAFNPKQRAAPEEINSWRTSGLQPRREAQERVA*
Ga0099830_100394053	3300009088	Vadose Zone Soil	MEGARNKREYDLYSAITFLLVGLGIGSLLAIVFSPKQRVAPAGIHSWRTSGLQPQREAREAEERVA*
Ga0099830_117087101	3300009088	Vadose Zone Soil	MQRATHDSEYDLNSAITFLLLGLGLGAVLGIAFNPKQNVAPQGINSRRMSGLQPRREAQE
Ga0116222_12423982	3300009521	Peatlands Soil	VKSEYDLDSAITLLLIGLGIGSVLAIVFNPKLGVALEETPSWRTAGLQTLKEAEAEERIA
Ga0116218_11165461	3300009522	Peatlands Soil	MKSEYDLCSAITFLLVGLGIGSVLAIVFNPKQRVALEGINSWRTAELQPQGEAEERVA*
Ga0116219_105640621	3300009824	Peatlands Soil	MEGATNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRTAPEEINSWRMSELRPRREAEE
Ga0127503_107655631	3300010154	Soil	CNRIGRGLMERTRNETEYDLYSAITFLLVGLGIGSLLAIVFNPQQRVATADSWRRPGLQQREKAEERVA*
Ga0136449_10007865710	3300010379	Peatlands Soil	MEGATKKSEYDFNSAITFLLVGLGIGSVLSILFNPKQKGAPEEINSWRMSGLRPPREAEERVV*
Ga0136449_1011880492	3300010379	Peatlands Soil	MEGALNESEYALYSAITFLLVGLGIGSVLAIAFNPKQRVAPEGINSWGNSGLQSRTEAEERAA*
Ga0137391_113160861	3300011270	Vadose Zone Soil	MEGAKNESEYDLYSAVTFLLVGLGIGSVLALVFNPKQRVAPEWINGRRMSGLQPRSEVEERV
Ga0137388_100389504	3300012189	Vadose Zone Soil	MEGARNESEYDLYSAITFLLVGLGIGSLLAIIFNPKQRIAPAGIDSWRTSGLQPRREAQERVA*
Ga0137383_113125621	3300012199	Vadose Zone Soil	MEGARNESGYDLYSAITFLLVGLGIGSFLAMVFTPKQRIATEGINSWRTSGLRPQTKAEKRVA*
Ga0137362_104319063	3300012205	Vadose Zone Soil	GSLFHILQERMERGLMEGARNESGYDVYSAITFLLVGLGIGSLLAMVLNPKQRIATEGINRWRTSGLRPQTKAEKRVA*
Ga0137361_109773682	3300012362	Vadose Zone Soil	MERGLMEGARNESGYDVYSAITFLLVGLGLGSLLAMVFNPKQRIATEGINSWRTSGLRPQTKAEKRVA*
Ga0137390_100263161	3300012363	Vadose Zone Soil	MEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSWRTSGLQPRRE
Ga0137359_105588422	3300012923	Vadose Zone Soil	MKDARNESENDLYSAITFLLVGLGIGSLLAIVFNPKQRVAPAGINSWRTSGLQPQREAEERVA*
Ga0137404_100677524	3300012929	Vadose Zone Soil	MERARNESENDLYSAITFLLVGLGIGSLLAIVFNPKQRVAPAGINSWRPSGLQPQREASKRVA*
Ga0181532_100049984	3300014164	Bog	MEGATNKSGYDLNSAITFLLVGLGIGSVLSILFNPKPKQRGAPEEINSWRMSGLRREAEERVA*
Ga0181532_100354454	3300014164	Bog	MKSEYDLYSAITFLLVGLGIGSVLAVVFNPKQRAAPEGIKLEGVNGIRGSNSWRTAGVRPQEEANERIA*
Ga0182018_100320763	3300014489	Palsa	MILAVTKSDSLLRILQERYGREVLMEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA*
Ga0182018_100612542	3300014489	Palsa	MEGVMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQKGAPEEINSRRMPGLRPRREAEERVA*
Ga0182015_100091935	3300014495	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEIKSWRMSGLRPRREAEEPVA*
Ga0187781_103141241	3300017972	Tropical Peatland	MKSGYDLYSAITFFFVGLGIGSVVAIVFDPKQRVAPDGIKGIKNWRAAGSQPQEEAKERI
Ga0187772_112756651	3300018085	Tropical Peatland	MLVASCSPEHVRGAMKSGYDLYSAITFFFVGLGIGSVIAIVFDPKQRVVPGGIKGIKNWRATGLQPQEEAKERIA
Ga0210407_1000088410	3300020579	Soil	MQRATRDSEYDLNSAVTFLLLGLGLGAVLGIAFNPKQNVAPQGINGRRMFGLQPRREAEERVA
Ga0210407_100122717	3300020579	Soil	MKSEYDLYSAITFLLVGLGIGSVLAVVFNPKQRVAPGEIDRWRMSGSQSRTEPEKRVA
Ga0210407_108829102	3300020579	Soil	MKSEYDFYSAVTFLLVGLGIGSALAIVFDPGQRVAPEGINSWRTARMPPQQEEAKERIA
Ga0210403_100107056	3300020580	Soil	MEGATKKSQYDLNSAITFLLVGLGIGSILAIVFDPKQRDIPEEINSGRMSELRPRREAAEGAA
Ga0210403_106600301	3300020580	Soil	MKSEYDLYSAITFLLVGLGIGSVLAVVFNPKQRVAPGEIDRWRMSGSQSRTEPEERVA
Ga0210399_100371583	3300020581	Soil	MKSEYDFYSAVTFLLVGLGIGSVLAIVFDPGQRVAPEGINSWRTARMPPQEEAEERIARVMEAL
Ga0210383_1001008713	3300021407	Soil	MQGTTNNYDLPSAVTFLLVGLGIGSILALVFNPKQRAAPQGINRRRISELQPRREAGAWERAA
Ga0210383_104999791	3300021407	Soil	MKDAKNKSEYDLNSAITFLMVGLGIGSVLALVFNPKQREEIDRGRRSEFRPRREEERVA
Ga0210394_1000017739	3300021420	Soil	MEGVRNKSEYDLNSAITFLLVGLGIGSVLAIVFNPKQTVAPEEINSWRMSELRTETEGGERVA
Ga0210394_1000293226	3300021420	Soil	MKNEYDLYSAITFLLVGLGIGSVLAIVFNPKQRVAPGEIDRWRMSGSQSRTEPEERVA
Ga0210394_112106501	3300021420	Soil	MEGARNKSEYDLNSAITFLLVGLGIGSILAVVFNPKQRAAPEEINSWRVSELRPETEAEERVA
Ga0210384_100005449	3300021432	Soil	MERATNKNEYDLNSAVTFLLVGMGIGTVLALAFNPKLNTKQRAAPEEINSWRMSGMHPRSEAEERVA
Ga0210384_100005953	3300021432	Soil	MEGATKKGEYDLNSAITFLLVGLGIGSILAIVFDPKQRDIPEEINSGRMSELRPRREAAEGAA
Ga0210384_100765532	3300021432	Soil	MEGATKKSGYDLNSAITFLLVGLGIGSILAVVLNPKQRTAPEEINRWRMAELQPRREAEEGAA
Ga0210384_112572561	3300021432	Soil	MKSEYDLYSAVTFLLVGLGIGSVLAIVFNPGQRVALERINSWRTAGMQPQEEAKERIA
Ga0210398_101209332	3300021477	Soil	MKSEYDLYSAITFLMIGLGIGSVLAIVFNPKQRVALEGISGWRKAGLHPEEEAEERERIA
Ga0210402_1000007846	3300021478	Soil	MVGRRNETEYDLYSAITFLLVGLGIGSLLAIVFNPKLRDTPAGIDRWRTSELQTRREAEERVA
Ga0210402_103069601	3300021478	Soil	MKSEYDLGSAITFLLVGLGIGSILAIVSNPKQRVALKGIKRINNWRSAGSQPQEEAKEQELRGLYP
Ga0210402_117125692	3300021478	Soil	SDYDLCSAITFLLVGLGIGSILAIVFNPKQRVALKGIKRMNNWRAAWLEPRGAAQEQELRGLYT
Ga0210410_101005632	3300021479	Soil	MEGARNKSEYDVYSAITFLMVGLGIGSVLAIVFSPKQRVALERINGSRMTGLEARSEEEEEDARVA
Ga0210410_101186624	3300021479	Soil	MQGARNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRAAPEEVNRWRMSELRPETEAEERVA
Ga0210409_105040332	3300021559	Soil	MEGATKKSQYDLNSAITFLLVGLGIGSILAIVFDPKQRDIPEEINSGGTSELRPRREAAEGAA
Ga0242659_10797162	3300022522	Soil	AAVTFLLVGLGIGSVLAIVFNPGQLGALERINRRRAPQMQSKEDANEQTA
Ga0212123_106669241	3300022557	Iron-Sulfur Acid Spring	LMEGATNKSKYELNSAITFLLVGLGIGSVLSILFNPKQKRGAPEEINSWRMSGLRPRREAEERVA
Ga0222756_10400871	3300022709	Soil	AVQRMRSEYDLSSAVTFLLVGLGIGSVLAIVFNPGQLGALERINRRRAPQMQSKEDANEQTA
Ga0207646_100540543	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSRRTSGLQPRREAQERVA
Ga0257173_10567701	3300026360	Soil	MEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSWRTSGLQPRREAQERVA
Ga0257169_10825441	3300026469	Soil	IFCRSAWREVLMEGARNESEYDLYSAITFLLVGLGIGSLLAIVFNPKQRIAPAGIDSWRTSGLQPRREAQERVA
Ga0209648_103794921	3300026551	Grasslands Soil	MEGARNKREYDLYSAITFLLVGLGIGSLLAIVFSPKQRVAPAGIHSWRTSGLQPQREAREAEERVA
Ga0209116_10892951	3300027590	Forest Soil	MESAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0208827_10564382	3300027641	Peatlands Soil	MEGATNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRTAPEEINSWRMSELRPRREAEERVA
Ga0209333_100004730	3300027676	Forest Soil	MESAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEINSWRMSGLRPRREAEERVA
Ga0209530_12022951	3300027692	Forest Soil	MEGAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEINSWRMSGLRPRREAEERVA
Ga0209446_10978722	3300027698	Bog Forest Soil	MEGALNESEYDLYSAITFLLVGLGIGSVLAIAFNPKQRVAPEGINSWGNSGLQSRTEAEERAA
Ga0209908_100000062	3300027745	Thawing Permafrost	MILAVTKSDSLLRILQERYGREVLMEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0209448_102583421	3300027783	Bog Forest Soil	MEGATNASEYDLNSAITFLLVGLGIGSVLAIVFNPKQRDAPKEVHSWRMSELRPRRETEERVA
Ga0209701_100452193	3300027862	Vadose Zone Soil	MEGARNESEYDLYSAITFLLVGLGIGSLLAIIFNPKQRIAPAGIDSWRTSGLQPQREAQERVA
Ga0209169_100110445	3300027879	Soil	MQGTTNNYDLPSAVTFLLVGLGIGSILALVFNPKQKAASEGINRRRISELQPRREAGAWERVA
Ga0209415_104506452	3300027905	Peatlands Soil	VKSEYDLDSAITFLLIGLGIGSVLAIVFNPKLGVALEETPSWRTAGLQTLKEAEAEERIA
Ga0209698_100355971	3300027911	Watersheds	MESATNEYDFNSAVTFLLVGLGIGSVLAIVFKPKQGVALGAAKDANEWRTDGLQPQEEAR
Ga0209698_102434311	3300027911	Watersheds	MEGATNESEYDLYSAITFLLVGLGIGSVLAIVFNPKQRVAPEGINSWRMSGLQSRTEAEERAA
Ga0302224_103005711	3300028759	Palsa	MEGVMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEIKSWRMSGLRPRREAEEPVA
Ga0302225_100907272	3300028780	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEIKSWRMSGLRPRREAEEPVA
Ga0311369_100958112	3300029910	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0311340_107748662	3300029943	Palsa	MEGVMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQKGAPEEINSRRMPGLRPRREAEERVA
Ga0311338_103425143	3300030007	Palsa	VKGITNKSEYDLNSAITFLLVGLGIGSVLSILFNPKQRGAPEEINSWRMSGLRPRREAEE
Ga0311338_106819671	3300030007	Palsa	EGAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKERGAPEEIKSWRMSGLRPRREAEEPVA
Ga0311338_110941482	3300030007	Palsa	ILAVTKSDSLLRILQERYGREVLMEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0311338_111887901	3300030007	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEE
Ga0302182_102574741	3300030054	Palsa	MNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0311370_100705386	3300030503	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGL
Ga0302183_102853961	3300030509	Palsa	MILAVTKSDSLLRILQERYGREVLMEGAINKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0311372_111458331	3300030520	Palsa	MEGATNRSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0311354_101887811	3300030618	Palsa	GREVLMEGAMNKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0316363_100096297	3300030659	Peatlands Soil	TNKSEYDLNSAITFLLVGLGIGSVLSIVFNPKQRTAPEEINSWRMSELRPRREAEERVA
Ga0302180_100083064	3300031028	Palsa	MEGAMNKSEYDLNSAITFLLVGLGIGSVLSIHFNPKERGAPEEIKSWRMSGLRPRREAEEPVA
Ga0265760_100363143	3300031090	Soil	MIKSDSLLRILQRAHGSEVLMEGATNKSKYDLNSAITFLLVGLGIGSVLSILFNPKQKRGAPEEINSWRMSGLRPRREAEERVA
Ga0302325_1000220718	3300031234	Palsa	MEGATNRSEYDLNSAITFLLVGLGIGSVLSILLNPKKRAVPEEINSWRMSGLRPQREAEERVA
Ga0302325_115203582	3300031234	Palsa	MILAVTKSDSLLGILQERYGREVLMEGAINKSEYDLNSAITFLLVGLGIGSVVSILFNPKQRGAPEEINSWRMSGLRPRREAEERVA
Ga0307483_10342821	3300031590	Hardwood Forest Soil	ATYKSEYDLNSAITFLLVGMGIGSVLAIVFNPKLNPKQRGAPEEINRWRMSGLRPRREAEERVA
Ga0310686_1102947741	3300031708	Soil	MEGAMNKSEYDLNSAITFLLVGLGIGSVLSILFNPKQKRGAPEEINSWRMSGLRPRREAEERVA
Ga0307477_105567321	3300031753	Hardwood Forest Soil	MKSEYDLYSAVTFLLVGLGIGSFLAIVFDPGQRVALEGTNSRRIARMPRQEEAKERMA
Ga0307475_103268682	3300031754	Hardwood Forest Soil	VNSRLRILQERLEEVLMEGATYKSEYDLNSAITFLLVGMGIGSVLAIVFNPKLNPKQRGAPEEINRWRMSGLRPRREAEERVA
Ga0316049_1099661	3300031866	Soil	HFARAHGREVLMEGATNKSEYDLNSAITFLLVGLGIGSVLSILFNPKQRGAPEENNSWRMSGLRPRREAEERVA
Ga0311301_1001712516	3300032160	Peatlands Soil	MKSEYDLCSAITFLLVGLGIGSVLAIVFNPKQRVALEGINSWRTAELQPQGEAEERVA
Ga0311301_104222742	3300032160	Peatlands Soil	MEGATKKSEYDFNSAITFLLVGLGIGSVLSILFNPKQKGAPEEINSWRMSGLRPPREAEERVV
Ga0311301_107963032	3300032160	Peatlands Soil	MEGALNESEYALYSAITFLLVGLGIGSVLAIAFNPKQRVAPEGINSWGNSGLQSRTEAEERAA
Ga0348332_109506473	3300032515	Plant Litter	RRMKSDYDLNSAISFLLVGLGIGSVLAIVFNPKQKVVLEGTKGINGWRTTQPEDQTTERV
Ga0348332_115836962	3300032515	Plant Litter	QRAHGSEVLMEGATNKSKYDLNSAITFLLVGLGIGSVLSILFNPKQKRGAPEEINSWRMSGLRPRREAEERVA
Ga0348332_133652142	3300032515	Plant Litter	MKSEYDLCSAITFLLVGLGIGSVLAIVFNPKQRVALEGINSWRTAGLQPQEEAEERVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077524

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences