NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10086900

Scaffold Ga0187846_10086900


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10086900 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086525Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0187846_100869002F086525GGCGGMLPVMVVLARQRAADDFETIRARMEELRRERAEAPRGEPIASPQPGSSSPSGHSAAADPGSVDASMD

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