NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086525

Metagenome / Metatranscriptome Family F086525

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086525
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 63 residues
Representative Sequence MVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Number of Associated Samples 72
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.45 %
% of genes near scaffold ends (potentially truncated) 40.91 %
% of genes from short scaffolds (< 2000 bps) 95.45 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.091 % of family members)
Environment Ontology (ENVO) Unclassified
(75.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.818 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.75%    β-sheet: 0.00%    Coil/Unstructured: 68.25%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF07978NIPSNAP 27.27
PF13340DUF4096 3.64
PF02148zf-UBP 2.73
PF00444Ribosomal_L36 2.73
PF07690MFS_1 1.82
PF04909Amidohydro_2 1.82
PF08241Methyltransf_11 0.91
PF00487FA_desaturase 0.91
PF00580UvrD-helicase 0.91
PF00239Resolvase 0.91
PF07508Recombinase 0.91
PF13428TPR_14 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0257Ribosomal protein L36Translation, ribosomal structure and biogenesis [J] 2.73
COG5207Uncharacterized Zn-finger protein, UBP-typeGeneral function prediction only [R] 2.73
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 1.82
COG0210Superfamily I DNA or RNA helicaseReplication, recombination and repair [L] 0.91
COG10743’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)Replication, recombination and repair [L] 0.91
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 0.91
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.91
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 0.91
COG3973DNA helicase IVReplication, recombination and repair [L] 0.91


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.09 %
All OrganismsrootAll Organisms30.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005332|Ga0066388_100914760All Organisms → cellular organisms → Bacteria → Proteobacteria1453Open in IMG/M
3300005363|Ga0008090_10077919Not Available892Open in IMG/M
3300005468|Ga0070707_102178079Not Available522Open in IMG/M
3300009090|Ga0099827_10736200Not Available853Open in IMG/M
3300009143|Ga0099792_10046259Not Available2100Open in IMG/M
3300010048|Ga0126373_12714513Not Available553Open in IMG/M
3300010359|Ga0126376_11034882Not Available824Open in IMG/M
3300010360|Ga0126372_10331119Not Available1355Open in IMG/M
3300010360|Ga0126372_10909966Not Available883Open in IMG/M
3300010361|Ga0126378_10470528Not Available1371Open in IMG/M
3300010366|Ga0126379_13223864Not Available546Open in IMG/M
3300010376|Ga0126381_100830014Not Available1328Open in IMG/M
3300010376|Ga0126381_103547289Not Available612Open in IMG/M
3300010398|Ga0126383_13285190Not Available528Open in IMG/M
3300012202|Ga0137363_10207750Not Available1574Open in IMG/M
3300012202|Ga0137363_11638565Not Available536Open in IMG/M
3300012917|Ga0137395_10475651Not Available899Open in IMG/M
3300012923|Ga0137359_10243694All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1604Open in IMG/M
3300012971|Ga0126369_10749332Not Available1056Open in IMG/M
3300012971|Ga0126369_12123056Not Available649Open in IMG/M
3300016270|Ga0182036_10331268All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1167Open in IMG/M
3300016270|Ga0182036_10366142Not Available1115Open in IMG/M
3300016270|Ga0182036_10763313Not Available786Open in IMG/M
3300016319|Ga0182033_10575176Not Available976Open in IMG/M
3300016319|Ga0182033_10660818All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LSJC280B00912Open in IMG/M
3300016319|Ga0182033_11889118Not Available543Open in IMG/M
3300016341|Ga0182035_10146616Not Available1806Open in IMG/M
3300016341|Ga0182035_10200738All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1577Open in IMG/M
3300016341|Ga0182035_10557668All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales985Open in IMG/M
3300016357|Ga0182032_11003854Not Available713Open in IMG/M
3300016357|Ga0182032_11466181Not Available592Open in IMG/M
3300016371|Ga0182034_10859252Not Available779Open in IMG/M
3300016387|Ga0182040_11474107Not Available577Open in IMG/M
3300016404|Ga0182037_11633628All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300016422|Ga0182039_11023007Not Available742Open in IMG/M
3300016422|Ga0182039_12163810Not Available513Open in IMG/M
3300016445|Ga0182038_10895550Not Available782Open in IMG/M
3300016445|Ga0182038_11635099Not Available580Open in IMG/M
3300017970|Ga0187783_10146593All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1739Open in IMG/M
3300021432|Ga0210384_11813483Not Available516Open in IMG/M
3300021476|Ga0187846_10086900Not Available1353Open in IMG/M
3300021560|Ga0126371_13527803Not Available528Open in IMG/M
3300027903|Ga0209488_10586071Not Available810Open in IMG/M
3300031231|Ga0170824_121791953Not Available1381Open in IMG/M
3300031544|Ga0318534_10659011Not Available593Open in IMG/M
3300031545|Ga0318541_10165857Not Available1216Open in IMG/M
3300031546|Ga0318538_10046957Not Available2094Open in IMG/M
3300031546|Ga0318538_10256485All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium940Open in IMG/M
3300031573|Ga0310915_10030662All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3355Open in IMG/M
3300031573|Ga0310915_10362863All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1027Open in IMG/M
3300031573|Ga0310915_11018581Not Available577Open in IMG/M
3300031573|Ga0310915_11021021Not Available576Open in IMG/M
3300031573|Ga0310915_11134485Not Available542Open in IMG/M
3300031640|Ga0318555_10260485Not Available937Open in IMG/M
3300031668|Ga0318542_10349877Not Available760Open in IMG/M
3300031680|Ga0318574_10376344Not Available829Open in IMG/M
3300031719|Ga0306917_10452683All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1005Open in IMG/M
3300031719|Ga0306917_11269236Not Available570Open in IMG/M
3300031744|Ga0306918_10988722Not Available654Open in IMG/M
3300031754|Ga0307475_10888537Not Available704Open in IMG/M
3300031763|Ga0318537_10369567Not Available529Open in IMG/M
3300031764|Ga0318535_10526524Not Available525Open in IMG/M
3300031771|Ga0318546_10245727All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1231Open in IMG/M
3300031779|Ga0318566_10176897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1059Open in IMG/M
3300031779|Ga0318566_10385203Not Available691Open in IMG/M
3300031781|Ga0318547_10248950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1071Open in IMG/M
3300031782|Ga0318552_10439020Not Available666Open in IMG/M
3300031793|Ga0318548_10301696All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300031796|Ga0318576_10175663All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1004Open in IMG/M
3300031798|Ga0318523_10646318Not Available520Open in IMG/M
3300031859|Ga0318527_10333458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium646Open in IMG/M
3300031879|Ga0306919_10148418Not Available1708Open in IMG/M
3300031879|Ga0306919_10172953All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1590Open in IMG/M
3300031879|Ga0306919_10479630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales958Open in IMG/M
3300031890|Ga0306925_10471747All Organisms → cellular organisms → Bacteria → Acidobacteria1339Open in IMG/M
3300031890|Ga0306925_11017462All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria843Open in IMG/M
3300031890|Ga0306925_11130698Not Available789Open in IMG/M
3300031890|Ga0306925_12272112Not Available502Open in IMG/M
3300031894|Ga0318522_10113896Not Available1008Open in IMG/M
3300031910|Ga0306923_10798401All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300031910|Ga0306923_11033762Not Available890Open in IMG/M
3300031912|Ga0306921_10199377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei2345Open in IMG/M
3300031912|Ga0306921_10645658Not Available1220Open in IMG/M
3300031912|Ga0306921_11501533Not Available736Open in IMG/M
3300031941|Ga0310912_10700083Not Available785Open in IMG/M
3300031942|Ga0310916_10878390All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300031946|Ga0310910_10202157All Organisms → cellular organisms → Bacteria1542Open in IMG/M
3300031946|Ga0310910_10703509Not Available798Open in IMG/M
3300031946|Ga0310910_10713848Not Available792Open in IMG/M
3300031946|Ga0310910_10774763Not Available756Open in IMG/M
3300031947|Ga0310909_10886298Not Available733Open in IMG/M
3300031947|Ga0310909_11344845Not Available573Open in IMG/M
3300031954|Ga0306926_11048491All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium967Open in IMG/M
3300031954|Ga0306926_12755491Not Available532Open in IMG/M
3300031959|Ga0318530_10285227Not Available682Open in IMG/M
3300032001|Ga0306922_10347865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1590Open in IMG/M
3300032001|Ga0306922_10565696All Organisms → cellular organisms → Bacteria → Acidobacteria1207Open in IMG/M
3300032001|Ga0306922_10795109Not Available989Open in IMG/M
3300032035|Ga0310911_10425163All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales769Open in IMG/M
3300032051|Ga0318532_10099079Not Available1027Open in IMG/M
3300032055|Ga0318575_10422592Not Available677Open in IMG/M
3300032059|Ga0318533_10138469All Organisms → cellular organisms → Bacteria1715Open in IMG/M
3300032059|Ga0318533_11090452Not Available585Open in IMG/M
3300032065|Ga0318513_10339659All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300032066|Ga0318514_10188992Not Available1077Open in IMG/M
3300032094|Ga0318540_10374908Not Available687Open in IMG/M
3300032261|Ga0306920_100062716All Organisms → cellular organisms → Bacteria5425Open in IMG/M
3300032261|Ga0306920_100491090All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1822Open in IMG/M
3300032261|Ga0306920_101932453Not Available829Open in IMG/M
3300033289|Ga0310914_10897814Not Available785Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil39.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil37.27%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.91%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.36%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.91%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.91%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066388_10091476023300005332Tropical Forest SoilMVVLAHHRAADDFEAIRARMDELRRERTEAVSGEPIASPRPSSPSPSRPDAAANPGFVDASLD*
Ga0008090_1007791913300005363Tropical Rainforest SoilMVVLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0070707_10217807913300005468Corn, Switchgrass And Miscanthus RhizosphereLPVMVVLAHRRAADDFETIRARVEELRRERAEALNGEPIASPQPSSPSPSRPGAAADPGFVDASMD*
Ga0099827_1073620023300009090Vadose Zone SoilMLVLSHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0099792_1004625933300009143Vadose Zone SoilMLVLAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0126373_1271451313300010048Tropical Forest SoilMIVLAHHSAADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0126376_1103488213300010359Tropical Forest SoilMVVLAHRPAADDFETIRARVEELRRERAEALNGEPIASPQPSSPSPSRPGAAADPGFVDPSID*
Ga0126372_1033111913300010360Tropical Forest SoilSLRAADDFKTIRERMEQLRRERAEAVKGEPIASPQPSSPSPSGSRAAADPGFLDASID*
Ga0126372_1090996623300010360Tropical Forest SoilMVVLTHNRAADDFEAIRARMEELRRERAEVVRGEPIGSPQPFSPSPSRPGAAADPGFVDASMD*
Ga0126378_1047052823300010361Tropical Forest SoilMIFPASSASLPGMVVLTSLRAADDFKTIRERMEQLRRERAEAVKGEPIASPQPSSPSPSRARAAVDPGFLDASID*
Ga0126379_1322386413300010366Tropical Forest SoilMVVLAHNRTADDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0126381_10083001433300010376Tropical Forest SoilMVVLTSPRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID*
Ga0126381_10354728913300010376Tropical Forest SoilAHRPAADDFETIRARMEELRRERAEAVRGEPTASPQPPMPSPSCPGAAADPGFVDPSID*
Ga0126383_1328519013300010398Tropical Forest SoilMVVLTSLRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID*
Ga0137363_1020775033300012202Vadose Zone SoilMVVLAHHRAADDFEAIRARMDELRRERTEAVRGEPSASSQPSSPSPSRPGAAANPGFVDASLD*
Ga0137363_1163856513300012202Vadose Zone SoilMLVLAHHCADDDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0137395_1047565123300012917Vadose Zone SoilMLVRAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0137359_1024369423300012923Vadose Zone SoilMIVLAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD*
Ga0126369_1074933223300012971Tropical Forest SoilMVVLISPRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSLPSRAAADPGFVDASID*
Ga0126369_1212305623300012971Tropical Forest SoilMVVLAHHRAADDFDAIRARMDELRRERTEAVSGEPIASPRPSSPSPSRPDAAANPGFVDASLD*
Ga0182036_1033126823300016270SoilFFSAAPTIFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0182036_1036614213300016270SoilMVWFFSAASTIFPVMVVLTHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPFSPSPSRPGAAADPGFVDASMD
Ga0182036_1076331323300016270SoilVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0182033_1057517633300016319SoilADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0182033_1066081833300016319SoilAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD
Ga0182033_1188911813300016319SoilLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPPSPSPSRPGAAADPGFVDASMD
Ga0182035_1014661613300016341SoilMVVLAHNRAADDFEAIRARMEDLRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0182035_1020073843300016341SoilMVVLTSRRAADDFKTIRNRMEELRRERAEAVRSEPIASPQPSSPSLSRSRAAADPGFVDASID
Ga0182035_1055766813300016341SoilDFDAIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0182032_1100385413300016357SoilWFFSAASTIFPVMVVLTHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0182032_1146618123300016357SoilMVVLTHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPPSPSPSRPGAAADPGFVDASMD
Ga0182034_1085925223300016371SoilSSAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD
Ga0182040_1147410713300016387SoilSTIFPVMVVLTHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPFSPSPSRPGAAADPGFVDASMD
Ga0182037_1163362813300016404SoilLLGMVVLTSPRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID
Ga0182039_1102300723300016422SoilMVVLTSPLAADDFKTIRKRMEELRRERAEAVRGEPIPSPQPSSSSPSCSRAAADPDFVDASID
Ga0182039_1216381013300016422SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSCPGAAADPGFVNASMD
Ga0182038_1089555013300016445SoilMVVLAHNHAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0182038_1163509913300016445SoilFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0187783_1014659313300017970Tropical PeatlandMLPVMVVLAHHRAADDFKTIRARMEELRRERAEAVRGEPTASPQPSSPSPSRPGAVADSTFVDASMD
Ga0210384_1181348313300021432SoilISPVMLVLAHDCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0187846_1008690023300021476BiofilmMLPVMVVLARQRAADDFETIRARMEELRRERAEAPRGEPIASPQPGSSSPSGHSAAADPGSVDASMD
Ga0126371_1352780323300021560Tropical Forest SoilMVVLAHHRAADDFEAIRARMDELRRERTEAVSGEPIASPRPSSPSPSRPDAAANPGFVDASLD
Ga0209488_1058607113300027903Vadose Zone SoilMLVLAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0170824_12179195323300031231Forest SoilMLVLAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPLPSRPGAAADPGFVDASMD
Ga0318534_1065901113300031544SoilVLAHHRVADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318541_1016585713300031545SoilMVVLTSRRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID
Ga0318538_1004695723300031546SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0318538_1025648513300031546SoilMVVLTSPRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID
Ga0310915_1003066233300031573SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGALADPGFVDASMD
Ga0310915_1036286323300031573SoilMVVPTHYRAADDFDAIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0310915_1101858113300031573SoilMIVLAHRRAADDFKAIRAQMEELRRERAEVVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0310915_1102102123300031573SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGQPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0310915_1113448523300031573SoilAFFSAASTIFPVMVVLTHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD
Ga0318555_1026048523300031640SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318542_1034987713300031668SoilFSAASTIFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGQPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318574_1037634423300031680SoilMVVLSHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGALADPGFVDASMD
Ga0306917_1045268323300031719SoilMVVLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPPSPSPSRPGAAADPGFVDASMD
Ga0306917_1126923613300031719SoilMVVLAHHRVADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306918_1098872223300031744SoilMLVLAHYRAADDFEAIRARMEDLRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0307475_1088853713300031754Hardwood Forest SoilLVFFSPASTIFPVMLVLAHHCAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318537_1036956713300031763SoilMVVLSHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318535_1052652413300031764SoilIFFSAASTIFPVMVVLAHHRAADDFEAIRARMEELRRERAEVVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318546_1024572723300031771SoilMVVPTHYRAADDFDGIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0318566_1017689743300031779SoilLAHHSAADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318566_1038520313300031779SoilMVVLAHNRAADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAA
Ga0318547_1024895013300031781SoilMVVLTHYRAADDFDAIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0318552_1043902013300031782SoilMVVLAHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318548_1030169613300031793SoilMIVLADDFEAIRARMEDLRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0318576_1017566313300031796SoilHHRAADDFEAIRARMEELRCERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318523_1064631813300031798SoilMIVLAHRRAADDFEAIRARMEELRRERAEVVRGEPIGSPQPSSPSPCRPGAAADPGFVDASMD
Ga0318527_1033345813300031859SoilMVVLSHHRAADDFEAIRARMEELRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0306919_1014841843300031879SoilMLVLAHHRAADDFEAIRARMEDLRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0306919_1017295313300031879SoilMIVLAHHSAADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306919_1047963023300031879SoilILPVMVVPTHYRAADDFDAIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0306925_1047174713300031890SoilMVVLTSPRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPTRAAADPGFVDASID
Ga0306925_1101746223300031890SoilMVWFFSRPRLLYFPSWLSSAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSRQPSSPSPSRPGAAADPGFVDASMD
Ga0306925_1113069823300031890SoilMIVLAHRRAADDFKAIRARMEELRRERAEVVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306925_1227211213300031890SoilADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318522_1011389623300031894SoilMVVLTHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306923_1079840113300031910SoilVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0306923_1103376213300031910SoilMVVLTSPRAADDFKTIRKRVEELRRERAEAVRGGPIASPQPSSPSRAAADPGFVDASID
Ga0306921_1019937713300031912SoilMIVLAHRRAADDFEAIRARMEELRRERAEVVRGEPIGSPQPSSPSPSRPGAAADPGFVDA
Ga0306921_1064565833300031912SoilLSSAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD
Ga0306921_1150153313300031912SoilASTIFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0310912_1070008323300031941SoilIFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSHPGAAADPGFVDASMD
Ga0310916_1087839013300031942SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSCPGAAADPGFVDASMD
Ga0310910_1020215743300031946SoilFFSAAPTIFPVMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASVD
Ga0310910_1070350913300031946SoilMVVLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSRQPSSPSPSRPGAAADPGFVDASMD
Ga0310910_1071384823300031946SoilMVWFFSRPRLLYFPSWLSSAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD
Ga0310910_1077476313300031946SoilMVWFFSAASTIFPVMVVLTHNRAADDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0310909_1088629823300031947SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASVD
Ga0310909_1134484513300031947SoilHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306926_1104849143300031954SoilADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306926_1275549113300031954SoilHHRAADDFQAIRARMEELRRERAEAVRCEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318530_1028522713300031959SoilTIFPVMVVLAHNRAADDFEAIRARMEQLRREQAEAVRGEPIGPPQPSSPSPSRPGAAADPGFVDASMD
Ga0306922_1034786513300032001SoilDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306922_1056569643300032001SoilRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASID
Ga0306922_1079510933300032001SoilVVLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSRPGAAADPGFVDASMD
Ga0310911_1042516323300032035SoilADDFDAIRARMDELRRERTEAVRGEPTASPQPSSPSPSRPGAAANPGFVDASMD
Ga0318532_1009907913300032051SoilAASTIFPVMVVLSHHRAADDFEAIRARMEELRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318575_1042259213300032055SoilMVVLAHHRAADDFEAIRARMEELRRERAEAVIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318533_1013846923300032059SoilMVVLAHHRAADDFKTIRTRMEELRRERTEALRGEPIASPQPSLPSPSRPGAAADPGFVDASMD
Ga0318533_1109045223300032059SoilMVVLAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSPSRPGALADPGFVDASMD
Ga0318513_1033965933300032065SoilRRMIFFSAAPTIFPVMVVLAHHRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0318514_1018899223300032066SoilMVVLTSRRAADDFKTIRKRMEELRRERAEAVRGEPIASPQPSSPSRAAADPGFVDASMD
Ga0318540_1037490823300032094SoilMVVLAHHRAADDFEAIRARMEQLRRERAEAVRGEPIGSPQPPSPSPSRPGAAADPGFVDASMD
Ga0306920_10006271683300032261SoilDDFEAIRARMEQLRREQAEAVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306920_10049109023300032261SoilMIVLAHRRAADDFEAIRARMEELRRERAEVVRGEPIGSPQPSSPSPSRPGAAADPGFVDASMD
Ga0306920_10193245323300032261SoilHHRAADDFEAIRARMEELRRERAEAVRGEPIGSLQPSSPSPSRPGAAADPGFVDASMD
Ga0310914_1089781423300033289SoilSWLSSAHNRAADDFEAIRARMEQLRRERAEAVRGEPIGSPRPSSPSRPGAAADPGFVDASMD


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