Scaffold Ga0187846_10000073

Overview

Basic Information

• Taxon OID: 3300021476
• Scaffold ID: Ga0187846_10000073
• Source Dataset Name: Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58100
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (94.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Brazil: State of Minas Gerais
• Coordinates
  • Lat. (^o): -19.8881
  • Long. (^o): -43.6761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000644	Metagenome / Metatranscriptome	965	Y
F006086	Metagenome / Metatranscriptome	382	Y
F086519	Metagenome	110	Y
F100143	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187846_1000007328	F100143	GGAG	MAEPIEETKLRRAALVYVMDLHCELTQENGAPPLGTQNQAVDLILGDPELRRALAEWAANAEIDAATTAPRRRPPQDTLYHRVRAYLEDIMGPPVFATAKQPNR
Ga0187846_1000007332	F086519	AGG	MMADRSLGLVFWRVLDALDYWLTLTRLRILDALCGAELHTPADE
Ga0187846_1000007336	F006086	AGG	MLSKGRAAMTPDQLRGAARNLAYGLGIPVYIRDGRIYQNGPGLAFLPPSGDPAVPEVPLAHEPDIANGSLTLAKAIGLLLITTQTLWLSWQMLT
Ga0187846_1000007337	F000644	GGAG	MTIDDLVQQIEETERLIVVYRNADEVVVGTQDQIYSRRGLINRTIFTAAEIGDQIVNILERRLATMRAQLKELDGKDLGQDR