Scaffold Ga0190334

Basic Information
Taxon OID	3300021467 Open in IMG/M
Scaffold ID	Ga0190334_1000912 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021467 Open in IMG/M

Scaffold ID

Ga0190334_1000912 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13387
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (47.06%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13387

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (47.06%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	Depth (m)	2011
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

Depth (m)

2011

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F056227	Metagenome	137	N
F059532	Metagenome	133	N
F069552	Metagenome	123	N
F096390	Metagenome	104	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190334_100091215	F069552	AGG	MKKNSIAWFVVECTKSITIQLRCFKCRFMFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCEEEYFLNNIVETDVSSRGFGTANIEVETTIPNDEEYQRLRRLINDWYKQKVDTFSFFLGIVMYTSYRDWRKMKELGVKFLELWRDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD
Ga0190334_100091217	F038026	GAGG	MLKFMVYKNEDEYVLIIEYEDRAERLLASSIKDLIQVIADTILYNFEGKSKHFEQSHYAKVEIV
Ga0190334_100091223	F056227	N/A	MEDKDNQILVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVRVPSTEYRDVNIDLRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190334_100091224	F059532	GAG	MRNILLLGDLHCGSTEGLWHPDFVIREGQRVKLSPLQEELYDKWLLLQEQLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEILHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNIYVL
Ga0190334_100091225	F100149	N/A	MYWSKEEEEILKSLWKKPDMTAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIIL
Ga0190334_100091227	F098395	AGAAG	MKIEVITPLDLEDFVKRIKNLEEDSKLHDSLLHDAFENIDQMKKRLNELEKRIKTLESDKEPYSESILD
Ga0190334_10009126	F096390	AGGAGG	MADIIKEIINLFVYPITHEVEAHGKLLTDEEKEEMLQRAKKRYERELIKIFEKHDRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190334_1000912

Overview

Ecosystem & Geography

Associated Families

Sequences