Scaffold Ga0182009_10007452

Overview

Basic Information

• Taxon OID: 3300021445
• Scaffold ID: Ga0182009_10007452
• Source Dataset Name: Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3626
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044098	Metagenome / Metatranscriptome	155	Y
F101615	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_100074523	F044098	AGGAG	MHPEELMRPDLLSEIVLLTFGTLLLSSLVWFVVAALARA
Ga0182009_100074525	F101615	AGGAG	MKTYYLHLRAFSCDLCQGPVVTGSTAVRERDIEKETEITQVGAICLSCGHRQSEATAPGKTRDFPPVLWEPPKAALLGNTASAYREMLNREELH