Scaffold Ga0206681

Basic Information
Taxon OID	3300021443 Open in IMG/M
Scaffold ID	Ga0206681_10002242 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021443 Open in IMG/M

Scaffold ID

Ga0206681_10002242 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8318
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8318

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051207	Metagenome / Metatranscriptome	144	Y
F064801	Metagenome / Metatranscriptome	128	Y
F066856	Metagenome	126	Y
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_1000224210	F103414	AGG	LSSFIFRAAGFSEIINLLKETNKSLKNVERLLEFTLSPPDLSKYKAGMSLDDIPRKKLSEAGNPSDLG
Ga0206681_1000224211	F051207	N/A	MASSIYIYTRREDYDNLYKGKEEAFTYQTPILDFFIRPTEGYDVGDSIPTNKLWVITHTDKLRQRPSLERTICVFTNGTCFDYVSGSELQVEKDKVVYNPTMNMLEFYPRRLRKPLLSLKVDRVVGGRPEKKSKINYKVKYYDMTHDRLNLFV
Ga0206681_100022423	F066856	AGG	MVELELEDYNELFDWFTLLFGKDPKKITMQAKKTFWKLQFLSEDKIKEHEEDIDDEK
Ga0206681_100022426	F064801	AGG	MGFTDRIKGMFNFRTKSMTETTVRPSVAQPYMATDTGAKLPIFPFPLIMIYELADNVDSLRIPIETVNREMFKNGFEIVEKFKYKCNNCAKEFQYKPLKDAIKDEQPQSTNESNADSIGSASTEKAVKKPEENKQGNDEALQCDTCFSTDLLRPEPRNRKILEEILYNPINSNQQTIEDIMRMLERDLEIADNAYMLLLKNYSINDTTGEIEDDKTEIKEILRVDPPQVAMIADSDGRIGFDDKHNPVYVCPRFEHRAKRLVSDHCDECGAQALKAIFEVNSVYSIGIPQPKRVIYGEGEVIWKAGKYRPGLIYGFSPIYAIWSKVMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKPGGKNMAQWLDFTGSLKELEFTEVRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQDILKNSFLLKLAKINGVEDWELRLKTGEETDKLRDLQIQGVEIENMLALQQLGFAITRTHTGEFKVSKDPLMVPETESLLGEGKTGRGRGTASPVEETQQNQGEPAKQRPSDIGGMGQGSPSSGTGTSMSDKAKKPQFDGITPANYEIVKSTLQDSIDFGWKKTKTVNMLRKNAIMTVRQAREIVNEELGQTRRWEDEDEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206681_10002242

Overview

Ecosystem & Geography

Associated Families

Sequences