NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206685_10031748

Scaffold Ga0206685_10031748


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10031748 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F060975Metagenome / Metatranscriptome132N
F097503Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206685_100317482F049037AGGAVLGTLALPDLRPEHGAKLLLFYIQIMEHNETMNESPCDTCHNYWVCVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPLAITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACRQVVLEAKARESTTRQYDHLGAVVRRKMGRNIAELRSDEDSSEEKQVKWVKLSETMW
Ga0206685_100317483F060975AGGAGMGKTIRNNVVAKHSEKYNKPKTIRDKKKDFYRPDAKREFEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED
Ga0206685_100317484F097503AGGAGMDGHTRTEMDCTTEAVMLFEDVVDVFEHRMIEGCIANEFKCTYNAEKGEFVAEINGKFYVSMTREKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.