Scaffold Ga0206685_10002715

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10002715
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5377
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033758	Metagenome	176	N
F041813	Metagenome	159	N
F074030	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_1000271512	F041813	GGA	VNRFTVVHTSELALHTDDLSWQARGLFLELLLAADFVTGMVPATSREQVRVWTGRSWSATANHLDELGKAGLIVESAAGIEVTVYPQISDPRGNREALRVHREQLALTAKSLAPTAKPTCGNADTITNYKTTVDGDRYIDGEWV
Ga0206685_100027155	F074030	GAGG	MSKMTKLIAAVTALLVALGTLVGTISMTIGKGPEPASGGITIVLNSDAAFEEFIANHPSN
Ga0206685_100027157	F033758	GGA	MAATAPPAEPSLWDQTGGLVSDAHPLTSHRAATTVKSGTQKAQILLALRAVWPDRGLTGYDLSTRGLVVNGAGLPISANQACTRLLELRDAGLVDFAREFPAGPIVEAPTTPGNTGQVHTLTAYGVSKASAIPA