Scaffold Ga0213879_10008022

Overview

Basic Information

• Taxon OID: 3300021439
• Scaffold ID: Ga0213879_10008022
• Source Dataset Name: Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2198
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.28
  • Long. (^o): -43.5919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002203	Metagenome / Metatranscriptome	584	N
F038256	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213879_100080222	F002203	AGGAG	VQTRREAVILMTAIPLLSTDAVAQPDRLDALFNQPAENLSVPSRVRQRYAILAYYIQLLNLQGPMRSRSEDIAAAIKTYQLVGESIARSDARFEGEVQASFVQSLRQAFSKSEEELRAFLRQVGIDPGLLAASVIEESLASNMLFYGAETRVTNVNDMLWCCFPFCFRRPT
Ga0213879_100080225	F038256	GGA	MKRCAQCHGKLGLGVRSRNLWNGRWWIHVRYCSTHCEALHEVERRQRPKRRW