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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021438 Open in IMG/M |
| Scaffold ID | Ga0213920_1009313 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3013 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004231 | Metagenome | 447 | Y |
| F015570 | Metagenome | 253 | Y |
| F024504 | Metagenome | 205 | N |
| F029673 | Metagenome | 187 | N |
| F032957 | Metagenome | 178 | Y |
| F079808 | Metagenome | 115 | N |
| F079815 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213920_100931310 | F032957 | AGGAG | MLNDTTRIFPRTLQEAFPNDYVNQDIIDGPYYSAPNIHDIPVLFGLITVISMVSVALWRY |
| Ga0213920_100931311 | F079815 | GGAG | LNDYSTILMRIEQSVKTLDKKCLNKKYDGFIQDISAIQNDLVMLSHWIGEQQVKQSQS |
| Ga0213920_10093133 | F004231 | AGGAG | MSVKPKDFQHEICVYLEGIGECLVCFDILTPGEELDADHSDDYEIDFAVFDEDDKHITYDISKKQYNHCENKAMDEMLEITTKWHNEWESV |
| Ga0213920_10093136 | F029673 | AGGA | MTKTEMIQHLRMAACNENTITGMSNAFDLGAEHERDVVCSLIFNMVKDIRLAQNIVDTIRVRE |
| Ga0213920_10093137 | F015570 | AGG | MNDKLDQAFDELEFDVTDQIRNSAYLAEQRKVATGVTDGTAQRNLVRDLTENLRTLPQSTDYNLLRNDVLEEVAVEFAKLPFGDTASSFAAFVRQMKR |
| Ga0213920_10093138 | F024504 | AGGAG | MDRPVVGITAPYRKSDYTYKDMLLDRIKDLEALVAKLEQRIKVLEGKK |
| Ga0213920_10093139 | F079808 | GGAGG | MKMKDELQAIYEDQADVYYCCYCLEPQGEKVTCCFENHFVEFKYLFPNDQQQIAQEILNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |