Basic Information | |
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Taxon OID | 3300021438 Open in IMG/M |
Scaffold ID | Ga0213920_1007997 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3412 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035668 | Metagenome / Metatranscriptome | 171 | Y |
F059759 | Metagenome / Metatranscriptome | 133 | Y |
F059760 | Metagenome / Metatranscriptome | 133 | N |
F068428 | Metagenome | 124 | Y |
F077016 | Metagenome | 117 | Y |
F102815 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213920_100799711 | F102815 | AGGA | MNTEELFLQAINAYKAWINTGKDFVNHADLYDVWDDAVMAYAQAIHLQRNRAVHQILQGLELIK |
Ga0213920_100799712 | F059759 | AGG | MTKQQIWDLLEIYRQMQVANTLTQYNDAFEELHVFIEENCLKEGN |
Ga0213920_10079972 | F068428 | GAG | MFEDLTIPKRQTNCRVRTILSELSDKDKVIVESAVMNPEWPYKTLSTEMYKRGIKCSDAAIKHHREKRCSCLKD |
Ga0213920_10079976 | F035668 | GGAG | MTCNNCPNDCQCSRVNSVNIFSRDYKAGRSEGQRLEATRTSDALIELERSGVITNAQLQAILDLILEKLTDQMDIL |
Ga0213920_10079977 | F059760 | GGA | MTETKDVITEAITRSRDNAIEAVISVVTSYRELQFNPNARKTLDDLLIQLNRFADGVKAGRNE |
Ga0213920_10079978 | F077016 | GAG | MKKPSIGRTSIVPTSSAENVREFYRRQGEERERTRLINLLKEQNVIRICAATGKLVFVNCNTLEVLYLKDDLANETASV |
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