NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1007997

Scaffold Ga0213920_1007997


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1007997 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3412
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035668Metagenome / Metatranscriptome171Y
F059759Metagenome / Metatranscriptome133Y
F059760Metagenome / Metatranscriptome133N
F068428Metagenome124Y
F077016Metagenome117Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100799711F102815AGGAMNTEELFLQAINAYKAWINTGKDFVNHADLYDVWDDAVMAYAQAIHLQRNRAVHQILQGLELIK
Ga0213920_100799712F059759AGGMTKQQIWDLLEIYRQMQVANTLTQYNDAFEELHVFIEENCLKEGN
Ga0213920_10079972F068428GAGMFEDLTIPKRQTNCRVRTILSELSDKDKVIVESAVMNPEWPYKTLSTEMYKRGIKCSDAAIKHHREKRCSCLKD
Ga0213920_10079976F035668GGAGMTCNNCPNDCQCSRVNSVNIFSRDYKAGRSEGQRLEATRTSDALIELERSGVITNAQLQAILDLILEKLTDQMDIL
Ga0213920_10079977F059760GGAMTETKDVITEAITRSRDNAIEAVISVVTSYRELQFNPNARKTLDDLLIQLNRFADGVKAGRNE
Ga0213920_10079978F077016GAGMKKPSIGRTSIVPTSSAENVREFYRRQGEERERTRLINLLKEQNVIRICAATGKLVFVNCNTLEVLYLKDDLANETASV
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