Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1002279 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1002279 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9281
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9281

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F006262	Metagenome / Metatranscriptome	377	Y
F009147	Metagenome / Metatranscriptome	322	N
F010611	Metagenome / Metatranscriptome	301	N
F074803	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_10022791	F074803	N/A	MEITIKLTPQQFNQLYELLVIGMKAGNVNNMKVGLPLVDILEAAAAQHKPE
Ga0213920_100227911	F010611	N/A	MTQKEYRMHSGLTSGYVTQLVARGMPLDSAEAADAWRQKNVRARARNTPPTVSEQEDTAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA
Ga0213920_10022795	F009147	GAG	MGREGFALVTATTAQTGNYSALIPTEPTVFTSITGYQISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS
Ga0213920_10022796	F005633	AGG	MRIATTISVDKSGKSKIVAGPEVDAAAQREDFNTAKIPEGSKLILWIQGSVAPKVRKG
Ga0213920_10022799	F006262	N/A	VFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLNDYDLAVYYLGQDGIANPTDPQIYNKLMTVVLIAATSYGGDFSNFRREGTFRTGMT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1002279

Overview

Ecosystem & Geography

Associated Families

Sequences