NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1002201

Scaffold Ga0213920_1002201


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1002201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9542
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F024504Metagenome205N
F029673Metagenome187N
F032957Metagenome178Y
F063332Metagenome129Y
F079808Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100220110F032957AGGAGMDEFNPTTRCFSRTLQEAYPKDYVNENLFEGPYYSAPNIHDVWVLFGLITVISMVSVALWRYF
Ga0213920_100220111F079808AGGAMKMKDELQVIYEDQADIYYCCYCLEPQGEKVTCCFENHFVEFKYLFPNDQQQIAQEILNG
Ga0213920_100220113F024504AGGAGMDRPVVGITAPYRKSDYTYKDMLLDRIKDLEALVAKLEQRIKKLEAK
Ga0213920_100220114F015570AGGMNDKLDQAFDELEFDVTNQIRNSTYLAEQRKVATGVTDGTIERALVRDLTENLRTLQTSNDPLLLRNDVLEEVARELAKLPFGDTAASYAAFVRAMKS
Ga0213920_100220115F029673AGGAMTKTEMVQHLRMAACEEQVINGMSNAFDLGAEHERDVVCSLIFNMVKDIRLAQNIVDTIRVRE
Ga0213920_100220118F004231AGGAGMSVKPKDFQHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKHITYDLERKHYNRCENKAYEEMLDITSQWKQEWEAV
Ga0213920_100220125F063332AGGTGGMKDAYELDLIRQFVRGLIDGIKDTHKPEEVDFYLADYWNAWDETLDINIWIDESDPQKYITTLYRVVDGVRDDETFQRLDYL
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