Scaffold Ga0213920_1001657

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1001657
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11883
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F004051	Metagenome / Metatranscriptome	455	Y
F014250	Metagenome / Metatranscriptome	264	Y
F018349	Metagenome / Metatranscriptome	235	Y
F025737	Metagenome / Metatranscriptome	200	Y
F079977	Metagenome	115	Y
F084151	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_10016571	F025737	GGAG	MKPLDKDKLNQCLEILDTTDLGLPMVWLWTWSTVRGFLESDDWRVNVTEDEMWEHLCEAVKAGQGFSLEY
Ga0213920_100165710	F000311	GGA	MYFELTAPDRLSMEMAYWEAQILGLDPQAMTPLTFNIGTGSIEKVSRLRDKFDLTESYIADYEPTGYTRR
Ga0213920_100165717	F004051	AGGA	MTIDGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVVLA
Ga0213920_100165718	F079977	N/A	MNNLYSILAELHPNGEFTESDLWEAIAESEGVEVNEIMDRDLTEYL
Ga0213920_100165726	F000447	AGG	MGFIEFARINEDGVSWVDLSEATPDELLTLEIGLFQEGAL
Ga0213920_10016573	F014250	AGGA	MQPISDELPPHLQDLLDLDVPIVDIMHGELKNLMVEAEEQYILAQQAEEESEEAMDSMERKYWEGQLDALTYLYTLTYNLSFAIADKETNA
Ga0213920_100165733	F084151	AGG	MTITYSLWQGNNLLAIDQSANSTNEIDNLIKELNTSDLAKSVKFSAIVRKIEVNK
Ga0213920_10016576	F000868	AGGA	MSDTSFIENENQMVIDAEIQAIGEQLFTEWMDSNLDEGQFYADFRFAEMSDSNYLKGRFNQFYDLTPEDDYYLEFDEEK
Ga0213920_10016577	F001125	AGGCGG	MGDRANFGFRDRKGDVVFLYGHWAGYEMLANLANAVEKARPRWTDEAYATRICISQLVGEDWKSETGWGIQVNELGDNEHKIPVIDWSNQTFTLYDYDLENLIFSMTLDNFCSKYARVLVPS
Ga0213920_10016579	F018349	AGGAG	MSDYKEGFQDGVTFAREVIIENIRKWAEDCIDGSEADVLDSVADRIERGQAND