NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000022

Scaffold Ga0210391_10000022


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)252140
Total Scaffold Genes215 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)176 (81.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003571Metagenome / Metatranscriptome479Y
F019702Metagenome / Metatranscriptome228Y
F020032Metagenome / Metatranscriptome226Y
F039578Metagenome / Metatranscriptome163Y
F082999Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_10000022130F019702GGGGGMKKMTSIFLTSAMLLGSVFAHAKDKHATIPSKVLSARTIYVDNQTNDAELQNDALVGLNKWGRFDIVDSPKKADLVLRLFGSSVVKFVPGSDPAASYNVKPVSANPAAGEELAPPGCTRVTVIEPKSGTALWTEIRKTSNAQEKSRLLEGLHDAVDQQEKNRNK
Ga0210391_10000022163F082999AGGMICRGNSLWLHSNVWAFLMLACAALMASLLGFGCRKNAHTSDSRLEQIDEMLNKQLPPGTSLARVDHFLKSRGYVVQDSPDKNSLVALVRHIDTEMLQPATARVTFHFDSNSNLISYDMQMVPDAPLRP
Ga0210391_10000022185F039578GAGMIHASEVLQSTGGCLLICLTRCVDVYTFTVDMGRPRKSEDHKRSKLFPLRLSPRETEFFSRKARALGESVASIFRNGGMLYIQMRSKDGSQKRKENKQ
Ga0210391_10000022197F003571GGAMTLDVKPKIAAALEALASAKGLSVEDYLEQLVEKELPLKLEDSTRSEGSGMVWENGLFVYRTGRPLPLRVVDDAIRQVREERAQHILGKHS
Ga0210391_1000002277F020032GAGMAAGAGSAGGILAVGIGAFRNFFRTNGLGLFQKIKEK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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