Scaffold Ga0210391_10000003

Overview

Basic Information

• Taxon OID: 3300021433
• Scaffold ID: Ga0210391_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 586564
• Total Scaffold Genes: 510
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 423 (82.94%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F007373	Metagenome / Metatranscriptome	352	Y
F026083	Metagenome / Metatranscriptome	199	Y
F060175	Metagenome / Metatranscriptome	133	Y
F077562	Metagenome / Metatranscriptome	117	Y
F090734	Metagenome	108	Y
F092653	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_1000000319	F007373	GGAGG	VSRSLQSHSLSNPALRPFDSNGMSTNARTPALCYTGSRITALSIEFVAQPNEAHKIHAALPAAIDGALGEVAGFAGSFVMIANHEARLVTVVTLWSGEDRMQRCNENVRWVRALLAPYLDRCLRVQTLAAYVPAAAEVPREFESSCAGETIESGLNEEAALCVA
Ga0210391_10000003211	F060175	GGAGG	MRISRLEIAGGVALLLAVLSVGLLAQDQSSPSHEERLKAINLVRAINTAEFRYSMGTRKDANDGHGRFAGWTELYGSGLLNQLQVSGEGPEIIPGYRLDLIVSPDGNSFMVALHDRKEGDGLFSVFSDQTGIIYLGAPLQ
Ga0210391_10000003259	F026083	GGAG	MEFETVYHPNLQLDLSEKREVWNTPGAFFVWMLVDGELAGESYGIPLASPTDFLDDLLVLPAREKENAVCCYSNTILPPFQKKGYGAILKAHWLGLAAGKGFDVVYGHARPGGSQALNAKFGAVFLEDLPNWFGSGEDYRKYRLVLDADSMS
Ga0210391_10000003461	F092653	GGAGG	MKKRILLFISVLFLFAMPLLAQDDSHSKKTTNCSGTISQDGLSFVSDKDHRTWKIANPGALRDMEGHHAKLVYRLTSNAGEIFVTSASIVQEQPTVARNPGDSSFRP
Ga0210391_10000003497	F000173	GGAGG	MKTFEVQFRYRDRNEETAESIVKVEGSSLPVAIGKATREFVKGLDRKERFDMNKNGLEITAKPIGAATEAEAAKQAAAS
Ga0210391_1000000390	F090734	GAG	VQNRFADIWKSASRQIICVVMILFGSLLAANVSVGPCGGTALAVEPFPAILVAIFGLELILCSYFLVKKLKVESDFRVVIYLFLVLWSLSLLSGAVDIVGSGMPPAKENINDFYFSLLRGSAAVANLILFYRWVGAKNMITRLW
Ga0210391_1000000395	F077562	AGG	MGAAWPFATFGYLMSTAGRLSGVLLGYGVPVSSPKPKRFQMTAGWLCLLAVALLYAPLAGAALLVYGVDCCVGGFCNVPEHHHHKQQPAPSEDSAPMDCGHGLSGMTPCSMSCCKDAARPALIPGAFVLPPSSFAPAVGEVLRPVKIASALEISQFLKPLSPPPRSAATVL