NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10169507

Scaffold Ga0210384_10169507


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10169507 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1961
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002584Metagenome / Metatranscriptome546Y
F042989Metagenome / Metatranscriptome157Y
F101564Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0210384_101695071F101564N/AMNIDRVRKELQESALRDFPNPERVGCPDAETLAGMSRRIIQMTQDQLHHVTH
Ga0210384_101695072F002584GGAMPVKPPPIVAPDSFGKPSEGFSRISAQAKDTVRRLRAYLRGRGSADLESLTNEAKTLTPAQWSAALPEQRRNGKVVYLDRPSLERIADPRGDPFETVYRKEIVSLLEAQLPPEQVPYLDAFLADDDPKDIAPRLGISAKAASARMRRFEAKLAVIYSGLTTRIKAPH
Ga0210384_101695073F042989GAGGMSAKHGAKESAAWTRELDVILLDGIEDNRQGKDLAHERVRALHPLPQGKDRYPKDFEKWLTKVFEKPSEDGAAPWLSLEFWQHEVDKVLIQGIFARNVTQDEVVQRVRSVWPKLSIAWLGARMEEVARTGLPRWMDQAFWATEIDPILLSGLRNASQCQSEAVETVLHEFPQLHVGMIWDRLRRLRKQRTANLQAVATAFVVANDCNDRVEAGGGQADSSATAQLDGRVPPSGIERRFWRTEVDPILLEGIRTANRLERETVDRVLRKFSELRIGTIWARLRRLQEQRKGNGHTGPPFRWTNELDER
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