Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000489 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	83148
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	88 (81.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

83148

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

88 (81.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000612	Metagenome / Metatranscriptome	985	Y
F001851	Metagenome / Metatranscriptome	626	Y
F042451	Metagenome / Metatranscriptome	158	Y
F067023	Metagenome / Metatranscriptome	126	Y
F076405	Metagenome / Metatranscriptome	118	Y
F081650	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100004891	F000612	N/A	DQPRWPAMDAESTPAFLDFKLVFQVSDEPVKYEDPMRQYRFVGRTASAQLEASVRVPSIDFTFRTDPLESSKCDFAVMGTEMNGKYYETTGR
Ga0210394_10000489100	F081650	N/A	MLKAADHEHDTANELEALVLLLPEKSRQLAQLQAKASHKQAKEFRELAQRVNES
Ga0210394_1000048913	F042451	GAG	VLNYFLLIKALAGASLSRQDLIHRPNAFARPSEGLHGPRLWPILLSFVLALPLCAQEFVPEHVVFPITDFKPDINHLDPFSVKFATGFCLDSDCRFVATNYHVAKMMGKYVRIKGVFSAHRYLDSDPDDAGAQDVNLVMLGGGSLKYTPAHDLAIYEMRHPLKNFHGIGFDADDLENGLEADIYAYPFNWNPKRGLVRWHGRLIGTTRDGLLAFSYEEGRVRGGASGGIVVDRKTKKIIGILNATGEGKDRVALAVPVKELASFITRAQPYLQATLFPKTVFVSPVAPDLYPPYVWPPAEKDLSWRPVDPPEVVMLRHTAQHLANSMRNFTATETFAWGVDDREPEVTDAYETVILDGWQRWRRPGNKKFYENVPFPPLNGAIVSGGEWSELPRMVGTELNLKIHQAPDAVVGGRTVHVFQYAASVEDKLCSFRYVMIYGFFERTTTKSYDCHGEVWMDDSGIILRISQAYDLSGSWHRWWAVITYGWLEKDGTQYLVPVTIATQAEHKKTYWCRGLFTDYEMFSAKTRLVLPTEPEQVQKTSLSPH
Ga0210394_1000048938	F067023	GAG	MAILCERIATEQDGEKFDKLVEELNDLLELKHKRIHPEHKPKSN
Ga0210394_1000048939	F001851	AGAAGG	MNATSISFGLLILLFTILLLRWMRRVKPQVAELRSQRMCPSCGLITSRLKANCLECGKPFTAVVYSTSKK
Ga0210394_1000048950	F076405	AGGAG	MSLSEEVRPLLTARAATDSDAARLLEIFTKADEILSELSRERIGDVETSGPVQVISGLLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000489

Overview

Ecosystem & Geography

Associated Families

Sequences