Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000191 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	147144
Total Scaffold Genes	136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	96 (70.59%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

147144

Total Scaffold Genes

136 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

96 (70.59%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002025	Metagenome / Metatranscriptome	603	Y
F003387	Metagenome / Metatranscriptome	490	Y
F005386	Metagenome / Metatranscriptome	402	Y
F024595	Metagenome / Metatranscriptome	205	Y
F050739	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000019119	F002025	GGGGG	VNDLNEVPKFVTQARASFLLGIPREDLRRISEESGLGHLERAGSEEEVYFTYEELRRICQLAFPATVSL
Ga0210394_1000019164	F050739	AGGAG	MASPAVSNKFRAVLCRHCAKPIRIPALVMKKESEFQSLTDSSDIHYHLISRVFNVRCRCCERESVYSINQIIDYPFAMAPALGDCKAASA
Ga0210394_1000019179	F003387	GGAG	MEKQLSTIGYWLGLICTVLALVLKALAAVKIYAPTVGTPGGTSISYLSFLHGAVLFFLLAIASWCRSAKS
Ga0210394_100001919	F005386	AGGGGG	MKSDYLEQLKSDIAARFEKDLRKPRTKPAAKPAIEEETVLEQQKQDHFARLLMAEAVRHL
Ga0210394_1000019199	F024595	N/A	MAAKIIRPSRIQPGFSAGLKTAVSITALLFVCAMSLRSDTRSSLLPQLKPGQTFLYEVHGRLNRSVKTQSNVSSLFGPQQLQGDLSSQLRLSVQKVLAGKPHPTVTLQMELLPAAPPASNSPASAIQKLTFDILGNGQLGNIKGLDDVSPEQRLLWQFWVARFAFGWILPPKQLKPGEKWKFEEPEFNDSLIAGLVWERETTYARDDQCPVFPAETCAVFLTESTLKQKSSAKDSTPESYRLHELKTSGTAKGHNQVIAYISRKTGLVLRANEDVQQSMDVTVMKSDGSNGVHYTVEATSHLETLFIPQTPGAAAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000191

Overview

Ecosystem & Geography

Associated Families

Sequences