Scaffold Ga0210394_10000177

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000177
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154079
• Total Scaffold Genes: 161
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (79.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001247	Metagenome / Metatranscriptome	737	Y
F002000	Metagenome / Metatranscriptome	606	Y
F012272	Metagenome / Metatranscriptome	282	Y
F019863	Metagenome / Metatranscriptome	227	Y
F036390	Metagenome / Metatranscriptome	170	Y
F063143	Metagenome / Metatranscriptome	130	Y
F077524	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000177118	F019863	AGGAGG	MSYSEARSHFEKARNNAADPGVIDMLEGLKHLSHAIEEDIRTLGQGIRDIGDNQKSKQIASSFS
Ga0210394_10000177125	F063143	N/A	MTNRNESPDSAAKTSQLHSTVAAGESKPTSKVRSILRIGLAVMALVTTSMAAELPEAPSGVGRADMIEAIEPVQVPKTAAARPKVKIIDKTFLSLAVISTGSTFADSYTTLFARQNWLAGKKGVCNVEVQSAYLYGTHPTVGRAYAVASAKSISSVFAAYYFRKHHNKFWSLPLVANSILSLQGVGQNMATCN
Ga0210394_10000177142	F002000	AGGAGG	LLKAVKDSIHRMTSHLQLISSYLEMGDYIKALGKTRETIKELHALATSLTGLANVGMTVPEDGAVVVPHGSTVVSHEDVNVDVDSHEVRSVGKDEVRTGCGSDNPKTK
Ga0210394_10000177146	F001247	AGGA	VITNTGKQADLESGLEKKEVQRPMHISAGEFIHWLAPDSQIDENSLRSLFEL
Ga0210394_1000017739	F077524	GAGG	MEGVRNKSEYDLNSAITFLLVGLGIGSVLAIVFNPKQTVAPEEINSWRMSELRTETEGGERVA
Ga0210394_1000017744	F036390	GAGG	MPPIEILSVDEASESAAPTTIPAKDRTPARRFYALSVKDHFRLLLPFLLAGAVGVLARANYPYSWPANELVYFLADALIVAMILGVAFDLFSAKLLVERVSDGLAQTLVGRGLPAEMQGLVRDVVSTDLVRDHYVKSYAFSTPENGRVQVNVEVRYEIRNYSEAVRDYAPELTAETFFQPEFRFLEYGIAGRKIYTFSDENLSSKVEIEDTLGVSRVPKTALPALSLKPVRAGEKAACQVTWRYGLTVPEQYCDVTDIDEATLGATLHVETLPEELEFVSGCDASLHHEAGSQTWYFERAFIAGQHLRAWWFRSKPAARVPRPRT
Ga0210394_1000017748	F012272	GGA	MRDVKMAPMKKDTRLTFRVNSDLKRDVEAIATREGQSVARICEAFIMAGSDAYKKQGTKSLRRMLGRLGTKTTD