Scaffold Ga0210394_10000054

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000054
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278307
• Total Scaffold Genes: 245
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 178 (72.65%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F025223	Metagenome / Metatranscriptome	202	Y
F027003	Metagenome / Metatranscriptome	196	Y
F028009	Metagenome / Metatranscriptome	193	Y
F035409	Metagenome / Metatranscriptome	172	Y
F046237	Metagenome / Metatranscriptome	151	Y
F046499	Metagenome / Metatranscriptome	151	Y
F053821	Metagenome / Metatranscriptome	140	Y
F056112	Metagenome / Metatranscriptome	138	Y
F059752	Metagenome / Metatranscriptome	133	Y
F094305	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000054112	F027003	GGAGG	MAIMHCRSIERRRTARAVVSIQMEVTGVTESNVPFKFSTRTISVSQHGGVILLEAPLPAGQKFELLNEFNRRTATCRIVSARVGKDGKLHGAFELHCPEGNFWSMSFPAAGARPIKRVFVAKSVVR
Ga0210394_10000054125	F059752	N/A	MRKSLTLSLTWLLTTILFAVTIENIWLDPWLRKQFHEFPSLAPQPPSVLWIVTFGAIGIICVVLIVGQVLLMRRAGVSRNSKIVAGVSVILALLLSVTWFLVTSGITPAPGL
Ga0210394_10000054134	F035409	AGGAGG	MKKITMLGMLIAVAMLCVGIWTAAQDKPEVVEVTGILVKVSAVGVDTTGWEIRLPNEMNIGGRMTRSVEVDGDPHKFQKLENLRITVKGYLMRPSENRIVIKVQKIKE
Ga0210394_10000054150	F046499	GAGG	MRRRMIQVFLATLLVLTTQGRSAVAALNPEAYKHDAQGLEKQFEPFLKAFQKGDDKGMDESFTVFRLPKAKEWFGNYFSAEDAAKLSSAYDREISDAESSLIEDMNKADPGSRFRARCEAIGESPAGQDSAGGYGLRPLKPIPVEQFRLEFRSGSHDQKFSFIANFVYVDGAYRFVGGGGAAFWAKPGASR
Ga0210394_10000054209	F056112	GGAGG	MDDSKRRVVNFLEKEIKTYAALSLFLSKKSTLGGLNARDKQALMHPAFYKERMKEARKLVTELKKSN
Ga0210394_10000054214	F028009	GGAGG	MHRQESDNLQTLLAAEGQLLDLISEGAPLEHVLNRVCTALDVQVGNIVSLVLFPDDEEHTSHTIARSAATLNLTVFSCTAILSPSEEFLGTLEIYCCFPRMPTLGERGLIDRAAQLASLAIQSYKHETDADGWPLDWTAVTRRSPCEGPPSNN
Ga0210394_10000054239	F025223	AGGAGG	MLILAKAALGLGATMAMNGVYVFHEGVIRVDVDEHRAGGSHVHVWVPATVVSLGMHFMPKDQLNHTTVEVRPLLPALREVAKELERYPNVELVDVTNARDHVRVAMVDGNLRIDAVSGDGDVVHVSVPARVLRDVADELEERAPGV
Ga0210394_1000005425	F046237	GAGG	MQKRIFHLLLILIGVATLALPLAFANSAYPKTASCPIEGGTAHATGKTRKAMQASCTDVEYKHKGTDYSDPRHPQKFNHMFWITHCTD
Ga0210394_1000005456	F000173	GGAG	MKSFEVQFRYQDRTAGTAESTVKVDASSLPGAVGKAVREFVKGLDRKQKFDMNKNGLEITAKSVGTASESPANKPAEAAAG
Ga0210394_100000549	F053821	N/A	MISRSPHISILLRALCALCVLCGDSFFLAHPLRAQNFDKPVTNIDEEVTAFAYAPNGNIVFSVRRMFKTKKYDLQRDDIWLLESGGKRKRLLEGQKFSHEDKLFTYQVESFTWSPNAHIIAVQLFTTTMDPDAGAREDAPALLLLDDSGRELRPNGKDPLVMQAQNPLWLRDNQTLVYLTNEDTPQGLYAMQYLNISSGPAGKAFEGRTFEGASRISGSNAAIASERSRTFDGPPRLQRLDLLAQDDKEVATLDAYAGGILVSPSGTRVAYFLDKEVLEIRDLTVPVRIARLRIGLGVLQWSADESRLYLKRTIEKKSADLVTFQVPELRAYPAHSEIPVLEPEPRMLLHGLTVREYSLSPDGRFLAVVLPGKRNLQIFGF
Ga0210394_1000005490	F094305	GAGG	MNPDIRKKAAIWLALVFIVGTATGGVFGYSLARRSYAATKVVMPSEAERRAKKLADMTQTVGLTAEQAQKAEGIIKEAQTEIHAIHDKSDAEVDVVRMKTRQEMRTFLTPEQLPKFEQYVQRMDEERKKQKEAQGGR