Scaffold Ga0210394_10000009

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000009
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 492652
• Total Scaffold Genes: 426
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 343 (80.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011416	Metagenome / Metatranscriptome	291	Y
F016707	Metagenome / Metatranscriptome	245	Y
F021344	Metagenome / Metatranscriptome	219	Y
F024595	Metagenome / Metatranscriptome	205	Y
F050739	Metagenome / Metatranscriptome	145	Y
F060155	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000009137	F016707	N/A	MAVALLSSAVLLRATDRLRELQEHFDRDTHAGAKIKDLQKLAAAEFDAATQAGKTGDFVAVGLIFEKYRDNVRQAFEFLRKQEPDADRHPGGYRQLELEVRQGVREVEDTLLVTPEELRPPLEIVRKDLIETDDALIHLLFPRRTKDPVKVAPAAEAKP
Ga0210394_10000009229	F011416	AGGTGG	MNFTSNSKWQLVLATLGVALFLASTVRAQEIDNAYFASPETSVGSNFNTPTAAAAVQAVNNAQVEYAAVSEASIFPANQQEEASVGSLPRALGSLIALGVLLIACGILWKNAGNRRNDTLKTHNSLSMRKNALPNRKAQALHS
Ga0210394_10000009237	F060155	N/A	MPERIRLGYHYLNLLGLTREVSLRFEKMKRMRRDSDAPGRKLRACVCLVAVMLLWAPAWLPALQAAGMTCCDGAMCPLHGHAPKKSSGDANAAKDAPMAGCEHNGRKAALDCTMASCHPSDPAVTGAIVFVLPNIVEISVPLLTGPPAPTLAWSASSLIFDLVSPPPRTLLLSL
Ga0210394_10000009368	F024595	AGGA	MNATIIPTPGAQPGFRRRVASAAMLAALIPCCALTLEIDASPLLLPLLRPGDALLYEVHGRINRSVKTESRVSSQFGPQQLQGDLSIQIHLSVQKTSAGKPHPSAAVETELFAATPPPGNSPAPRAGKLSFDILGNGQLGNVRDLGDLSPEQRLIWQFWVARFAFGWTLPPTRLKPGEKWKFEEPELNDSVIAGLVWERETTYARDDQCPVIPAESCAVFLTESTLKQKSSTKDSTPEAYRLHELKTLGTAKGHNEVITYISKKTGLVLRANEDVQQSMDVTVMKSDGTNGVHYTVEATSHLETLLVPQPNPPSPAQP
Ga0210394_10000009397	F050739	AGGAG	MASPVVSEKFRAVVCRHCSKPIRVPGLVSRKEIEFQGLTDSGDIHYHLISRVFNVRCRSCERESVYSINQIVDYPFALAASAADRKSAAL
Ga0210394_1000000989	F021344	AGG	MVKRKRDRLEKGTEARRRARKSGLAPAGTRVIPDKRKKAEKHKPDLIQEVD