Scaffold Ga0210394_10000008

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000008
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 502903
• Total Scaffold Genes: 452
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 299 (66.15%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000969	Metagenome / Metatranscriptome	818	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001869	Metagenome / Metatranscriptome	624	Y
F002981	Metagenome / Metatranscriptome	516	Y
F003708	Metagenome / Metatranscriptome	473	Y
F003854	Metagenome / Metatranscriptome	465	Y
F005420	Metagenome / Metatranscriptome	401	Y
F007764	Metagenome / Metatranscriptome	345	Y
F012737	Metagenome / Metatranscriptome	278	Y
F050313	Metagenome / Metatranscriptome	145	Y
F084584	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000008117	F003854	AGGAGG	MATRARLNRNPYFHFHPLHAAFSVIGSVILFGLLVWFLAVPAR
Ga0210394_10000008176	F050313	GGA	VIGRKVLIVKRSLTITALLFLLNPLVVSQTPSHGTDCPTLKYSRRHKTSCLCGTVEVCSGDICGRPSDYGLDDDITVELRDKAGATILDSKKAVVEIREKEGTTQDGTKASFKTKDRRFCFEGQADGDYVFAFVLYKNSVPQPAVKFPQNYSRKRRKSCDATYMVEPICPK
Ga0210394_10000008212	F005420	GGAGG	MTRTLRSLAGILLIVAASVAQTAEPTIYAESFRHGSTRVTEDAFDVKLTPENASYRERIKDSRGEDRYELTVTPHVLVGGNQITLWEVKLADLRHRIYSNVLVADQEPSPDARNNLWKLDPNRFSPVPIRARRIMKVDDFYVVIQVKDLHFTPLDSPYLDSMAVQFGFTNSDPRASH
Ga0210394_1000000825	F012737	N/A	MTRNRGNPDWRRPTSSCPALATEFELRVKQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLAEWGVTVDPTFSDAA
Ga0210394_10000008331	F002981	N/A	VLIAIGALLVVVLIASFLKRAKPQASGTLDTVTAVEIPGQTSTMVALTFTINNTSDKILYVRSLQGSIKAPSGEATAEAVSAVDFERYYQAFPTLKNGVQPALPPETKIQPGEKVARTIIVVLPITLNAFNLRTSTSVIVWLYDQTVPVTLTK
Ga0210394_10000008345	F001869	N/A	MRLWVRWSAWICLSLMMWTVAAESTHNHPNRTESASCSICVVAHSASPTVSSSQSAPAFAAVGLMREEDVVAKARFDFSDQGIRGPPAL
Ga0210394_10000008349	F000969	GAGG	MVNDDVVKCPLCGGFTHIEKPELLDALRNPRLREQVERYIVELLKSPVDELSTVGATQAGGNFQKDVHRWNPCVPMWKRSPKE
Ga0210394_1000000837	F007764	N/A	MGVTVEMHNTADAATRRDVIAMIEHVLSDRLGDWRVEIMGSQANDCWEMRITGPNGFERSYTLEGTLGQHEPSTVASIIAQMLPSRG
Ga0210394_10000008428	F000978	AGGAG	VQAISCLRCRREIEAGHKSVAVYMFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGMPPEGALNLAAWDMIRDLVSAEPSLNQAAWESLRGGVALLGSGEDSAADARGRFRRAG
Ga0210394_100000085	F084584	GGAG	VKRVRRNPRVICYVGSKDGPAISGTAQIITDVSEVARVYRSYWKVHPVRMAIIIGLRVWVEMLLNKRVVVRVQPDDPNPVAGLTDPA
Ga0210394_1000000886	F003708	AGGA	MNLMTLILPTVFFLSISGPTTPPAILSAQPSAAIIPQDSNARPLSSEETIEPGSRVGPLKLGDTRDRALELFPKKSEDQEWENSCGTTLDWVDAQNPTGHGDLLIRLKKGKVFQIESTTTRFHTAEGITTFDHSEKIASAYKDLRAFTLLTPPAPALGDRPLVFWIDKKKGIAFTFAYYPQEHKRYLYKISVFEPNKNFCPEEETTSSPKWQSIPPYALEPPAELAPNLN