NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084584

Metagenome / Metatranscriptome Family F084584

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084584
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 80 residues
Representative Sequence VGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Number of Associated Samples 98
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 8.04 %
% of genes near scaffold ends (potentially truncated) 84.82 %
% of genes from short scaffolds (< 2000 bps) 81.25 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.750 % of family members)
Environment Ontology (ENVO) Unclassified
(31.250 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.464 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.86%    β-sheet: 0.00%    Coil/Unstructured: 62.14%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF01145Band_7 4.46
PF12697Abhydrolase_6 3.57
PF01227GTP_cyclohydroI 2.68
PF00326Peptidase_S9 2.68
PF06803DUF1232 1.79
PF10263SprT-like 1.79
PF13683rve_3 1.79
PF00589Phage_integrase 1.79
PF027395_3_exonuc_N 1.79
PF03449GreA_GreB_N 1.79
PF06912DUF1275 0.89
PF13185GAF_2 0.89
PF02371Transposase_20 0.89
PF08534Redoxin 0.89
PF07676PD40 0.89
PF13751DDE_Tnp_1_6 0.89
PF14534DUF4440 0.89
PF12681Glyoxalase_2 0.89
PF05649Peptidase_M13_N 0.89
PF01548DEDD_Tnp_IS110 0.89
PF08570DUF1761 0.89
PF07593UnbV_ASPIC 0.89
PF04545Sigma70_r4 0.89
PF01545Cation_efflux 0.89
PF13924Lipocalin_5 0.89
PF14559TPR_19 0.89
PF11154DUF2934 0.89
PF07715Plug 0.89
PF07238PilZ 0.89
PF11737DUF3300 0.89
PF13620CarboxypepD_reg 0.89
PF03824NicO 0.89
PF04542Sigma70_r2 0.89
PF00903Glyoxalase 0.89
PF07228SpoIIE 0.89
PF13276HTH_21 0.89
PF03795YCII 0.89
PF13432TPR_16 0.89
PF03652RuvX 0.89
PF04255DUF433 0.89
PF00072Response_reg 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 1.79
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 1.79
COG3339Uncharacterized membrane protein YkvA, DUF1232 familyFunction unknown [S] 1.79
COG3547TransposaseMobilome: prophages, transposons [X] 1.79
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.89
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.89
COG0816YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factorTranslation, ribosomal structure and biogenesis [J] 0.89
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.89
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.89
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.89
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.89
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.89
COG3590Predicted metalloendopeptidasePosttranslational modification, protein turnover, chaperones [O] 0.89
COG3619Uncharacterized membrane protein YoaK, UPF0700 familyFunction unknown [S] 0.89
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.89
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.89

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_100998144All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300000955|JGI1027J12803_105031739All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005176|Ga0066679_10642734All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300005434|Ga0070709_11186082All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300005436|Ga0070713_101954676All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300005437|Ga0070710_10560482All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300005439|Ga0070711_101454654All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300005467|Ga0070706_100175311All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2002Open in IMG/M
3300005541|Ga0070733_10007361All Organisms → cellular organisms → Bacteria7126Open in IMG/M
3300005542|Ga0070732_11003146All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300005569|Ga0066705_10134124All Organisms → cellular organisms → Bacteria1507Open in IMG/M
3300005574|Ga0066694_10061355All Organisms → cellular organisms → Bacteria1722Open in IMG/M
3300005587|Ga0066654_10583642All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300005587|Ga0066654_10610848All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300005598|Ga0066706_10194687All Organisms → cellular organisms → Bacteria1554Open in IMG/M
3300006028|Ga0070717_10083847All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2681Open in IMG/M
3300006052|Ga0075029_100086939All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1860Open in IMG/M
3300006174|Ga0075014_100128186All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300006175|Ga0070712_100056942All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2744Open in IMG/M
3300006176|Ga0070765_100211034All Organisms → cellular organisms → Bacteria → Acidobacteria1766Open in IMG/M
3300006804|Ga0079221_10662103All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium718Open in IMG/M
3300006806|Ga0079220_10905614All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300007265|Ga0099794_10789288All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300009038|Ga0099829_11749528All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300010048|Ga0126373_12748542All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300010320|Ga0134109_10076279All Organisms → cellular organisms → Bacteria1142Open in IMG/M
3300010358|Ga0126370_12152516All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300010376|Ga0126381_100989662All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1213Open in IMG/M
3300010376|Ga0126381_102556638All Organisms → cellular organisms → Bacteria → Acidobacteria731Open in IMG/M
3300011120|Ga0150983_14249796All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300011271|Ga0137393_11241261All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae632Open in IMG/M
3300012203|Ga0137399_10457092All Organisms → cellular organisms → Bacteria → Acidobacteria1068Open in IMG/M
3300012207|Ga0137381_10495550All Organisms → cellular organisms → Bacteria1066Open in IMG/M
3300012209|Ga0137379_10121641All Organisms → cellular organisms → Bacteria2510Open in IMG/M
3300012209|Ga0137379_10675953All Organisms → cellular organisms → Bacteria938Open in IMG/M
3300012350|Ga0137372_10972374All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium595Open in IMG/M
3300012357|Ga0137384_10063352All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3067Open in IMG/M
3300012361|Ga0137360_10019402All Organisms → cellular organisms → Bacteria4508Open in IMG/M
3300012685|Ga0137397_10634024All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300012960|Ga0164301_11177629All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300012971|Ga0126369_11363110All Organisms → cellular organisms → Bacteria → Acidobacteria799Open in IMG/M
3300014150|Ga0134081_10030143All Organisms → cellular organisms → Bacteria1568Open in IMG/M
3300014495|Ga0182015_10963142All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300016357|Ga0182032_11782825All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300016445|Ga0182038_10209816All Organisms → cellular organisms → Bacteria → Acidobacteria1539Open in IMG/M
3300017657|Ga0134074_1183924All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300017823|Ga0187818_10357147All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300017933|Ga0187801_10271620All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300017936|Ga0187821_10079924All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300017936|Ga0187821_10231733All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium717Open in IMG/M
3300017943|Ga0187819_10271461All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300017943|Ga0187819_10850946All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300017946|Ga0187879_10809290All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300017955|Ga0187817_10551623All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300017961|Ga0187778_10893623All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300017972|Ga0187781_11477045All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300018001|Ga0187815_10191536All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300018057|Ga0187858_10329737All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300018058|Ga0187766_10073514All Organisms → cellular organisms → Bacteria → Acidobacteria2040Open in IMG/M
3300020579|Ga0210407_10352296All Organisms → cellular organisms → Bacteria1152Open in IMG/M
3300020579|Ga0210407_10783864All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300020581|Ga0210399_10085448All Organisms → cellular organisms → Bacteria2567Open in IMG/M
3300020582|Ga0210395_11160391All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300020583|Ga0210401_10390450All Organisms → cellular organisms → Bacteria → Acidobacteria1254Open in IMG/M
3300021178|Ga0210408_11394324All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300021401|Ga0210393_10978689All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300021404|Ga0210389_10057473All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2982Open in IMG/M
3300021420|Ga0210394_10000008All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae502903Open in IMG/M
3300021420|Ga0210394_11348450All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300021474|Ga0210390_10261402All Organisms → cellular organisms → Bacteria1466Open in IMG/M
3300021475|Ga0210392_10606096All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300021475|Ga0210392_10988804All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300021479|Ga0210410_11237464All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300021559|Ga0210409_10049162All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3971Open in IMG/M
3300021560|Ga0126371_13189763All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300022724|Ga0242665_10036941All Organisms → cellular organisms → Bacteria1236Open in IMG/M
3300024271|Ga0224564_1113110All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300024323|Ga0247666_1037697All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium997Open in IMG/M
3300025910|Ga0207684_10144360All Organisms → cellular organisms → Bacteria2047Open in IMG/M
3300026305|Ga0209688_1110489All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300026308|Ga0209265_1020504All Organisms → cellular organisms → Bacteria2052Open in IMG/M
3300026356|Ga0257150_1020547All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae926Open in IMG/M
3300026537|Ga0209157_1000056All Organisms → cellular organisms → Bacteria → Acidobacteria94837Open in IMG/M
3300026984|Ga0208732_1030989All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300027071|Ga0209214_1003813All Organisms → cellular organisms → Bacteria1590Open in IMG/M
3300027765|Ga0209073_10099952All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1022Open in IMG/M
3300027842|Ga0209580_10158981All Organisms → cellular organisms → Bacteria1114Open in IMG/M
3300027867|Ga0209167_10008566All Organisms → cellular organisms → Bacteria4905Open in IMG/M
3300027908|Ga0209006_10482169All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300028536|Ga0137415_10147925All Organisms → cellular organisms → Bacteria2186Open in IMG/M
3300028780|Ga0302225_10272668All Organisms → cellular organisms → Bacteria → Acidobacteria805Open in IMG/M
3300030053|Ga0302177_10595714All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300030730|Ga0307482_1080474All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300031057|Ga0170834_111725573All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300031474|Ga0170818_114220776All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300031708|Ga0310686_100381477All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300031715|Ga0307476_10331166All Organisms → cellular organisms → Bacteria1119Open in IMG/M
3300031718|Ga0307474_10930106All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300031719|Ga0306917_10171186All Organisms → cellular organisms → Bacteria → Acidobacteria1626Open in IMG/M
3300031753|Ga0307477_10031469All Organisms → cellular organisms → Bacteria → Acidobacteria3635Open in IMG/M
3300031753|Ga0307477_10148758All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300031754|Ga0307475_10115949All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2104Open in IMG/M
3300031754|Ga0307475_10326094All Organisms → cellular organisms → Bacteria1233Open in IMG/M
3300031945|Ga0310913_10148737All Organisms → cellular organisms → Bacteria → Acidobacteria1617Open in IMG/M
3300031962|Ga0307479_10010936All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium8447Open in IMG/M
3300031962|Ga0307479_10523886All Organisms → cellular organisms → Bacteria → Acidobacteria1168Open in IMG/M
3300031962|Ga0307479_10576549All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300031962|Ga0307479_11886343All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300032035|Ga0310911_10785786All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300032042|Ga0318545_10124365All Organisms → cellular organisms → Bacteria → Acidobacteria911Open in IMG/M
3300032180|Ga0307471_100078370All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2892Open in IMG/M
3300032180|Ga0307471_103457115All Organisms → cellular organisms → Bacteria → Acidobacteria559Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.75%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil11.61%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.82%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.14%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.36%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.57%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.68%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.68%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.68%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.79%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.79%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.79%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.79%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026984Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)EnvironmentalOpen in IMG/M
3300027071Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10099814413300000364SoilAISGTAQIVTEPSELARVYRGYWKVHPLRMAIIVGFRVWIEMLLNKRVVVRVQPDEPNPLAGLTDPGI*
JGI1027J12803_10503173923300000955SoilGTAQIVTEPSELARVYRGYWKVHPLRMAIIVGFRVWIEMLLNKRVVVRVQPDEPNPLAGLTDPGI*
Ga0066679_1064273423300005176SoilGNSYKVKRARKNPRVMCYVGSKDGPAISGTAQIITERSEVARVYRGYWKTHPLQMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0070709_1118608223300005434Corn, Switchgrass And Miscanthus RhizosphereSSYKVKRVRKNPRVICYVGSKDGPAISGTAQIISDRSELARVYRSYWKVHPLRMAILIGLRVWIEMLLNQRVVVRVQPDEPNPLAGITDPAS*
Ga0070713_10195467613300005436Corn, Switchgrass And Miscanthus RhizosphereNSYKVKRARMNPRVTCYVGSEDGPAISGTAQIITDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPVT*
Ga0070710_1056048213300005437Corn, Switchgrass And Miscanthus RhizosphereQIVTEPSELARVYRGYWKVHPLRMAIIVGFRVWIEMLLNKRVVVRVQPDEPNPLAGLTDPGI*
Ga0070711_10145465413300005439Corn, Switchgrass And Miscanthus RhizosphereGTAQIITDRGEVARVYRGYWKSHPVRMAILIGLRVWIEMLLNKRVVVRIQPDEPNPLAGLTDPAT*
Ga0070706_10017531153300005467Corn, Switchgrass And Miscanthus RhizospherePRVVCYVGGKNGLAIEGTAQIVSDRGELGRVYRSYWKTHPLRMALIIGLRLWIEVLMNTRVVVRVQPDEPNPLAGYNDPAVPA*
Ga0070733_1000736143300005541Surface SoilVKRVRRDPRVICYVGSKDGPTISGTAQIITDRREVARVYRSYRKVHPLRMAIVIGLLVWIEMRLNKRVVVRVQPDEPNPLAGVSDPGI*
Ga0070732_1100314613300005542Surface SoilRNPRVICYVGSKDGPAISGTAQIITDRSELARVYRSYWKVHPLRMAIVIGLRVWIEMLLNQRVVVRVQPDEPNPLAGLTDPAI*
Ga0066705_1013412413300005569SoilVNGGQIEFLTPGNSYKVKRARKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0066694_1006135543300005574SoilGQIEFLTPGNSYKVKRTRKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0066654_1058364223300005587SoilIEFLTPGNSYKVKRARKNPRVMCYVGSKDGPAISGTAQIITDPSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPALPE*
Ga0066654_1061084823300005587SoilEDGPAISGTAQIITDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVRPDEPNPLAGLTDPAT*
Ga0066706_1019468713300005598SoilVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0070717_1008384743300006028Corn, Switchgrass And Miscanthus RhizosphereVYQGQIEFLTSGDSYKVKRVRRNPHVICYVGGKNGPAIPGTAQIITARDELMRVYRSYWKVHPIAMALMIGLRVWIGILLNQRVAVRVQPDEPNPIAGLNDPAP*
Ga0075029_10008693913300006052WatershedsALRNPRVICYVGSKDGPAVSGTAQIVTDRSEVARVYRGYWRAHPVRMGIVVGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPAI*
Ga0075014_10012818613300006174WatershedsVRRNPRVICYVGSKDGPTISGTAQIITDRSEVARVYRSYWKVHPLRMAILIGLRVWIEMLLNKRVVVRVQPDQPNPIAGLTDPSI*
Ga0070712_10005694243300006175Corn, Switchgrass And Miscanthus RhizosphereVWLLVNGGQIEFLTLGNSYKVKRARRNPQVICYVGSKDGPAISGTAQIVTEPSELARVYRGYWKVHPLRMAIIVGFRVWIEMLLNKRVVVRVQPDEPNPLAGLTDPGI*
Ga0070765_10021103413300006176SoilAYRGYWRTHPLRMAIVVGVRIWIEMLLNLRVVVRVQPDEPNPLTGLTDPAI*
Ga0079221_1066210323300006804Agricultural SoilPGDSYKVKRARKNPRVVCYVGSKDGPAIPGKARIITDRSEVARVYRAYWKTHPLLMAMGIGLRVWMEMLLNKRVVVRVQPDEPNPLEGLSDPAR*
Ga0079220_1090561413300006806Agricultural SoilKVKRARKNPRVVCYVGGKDGPAIPGTARIITDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVQPDDPNPLEGLSDPAT*
Ga0099794_1078928813300007265Vadose Zone SoilRSEVARVYRGYWKTHPMRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0099829_1174952813300009038Vadose Zone SoilIEFLTPGNSYKVKRARRNPRVTCYVGSEDGPAISGTAQIITDRTEVARVYRSYWKCHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNRLAGLTDPVT*
Ga0126373_1274854213300010048Tropical Forest SoilRNPRVICYVGSKHGPEISGTANIITDRTEVARVYRNYWKAHPLRMAVAIGLVIWVEMLLNKRVLVRVQPDDPNPLAGLTDPAI*
Ga0134109_1007627913300010320Grasslands SoilKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0126370_1215251613300010358Tropical Forest SoilLQVWLVVNDGQIEFLTREDAYKVKRVRRNPRVICYVGSKHGPEISGTANIITDRSEVARVYRNYWKAHPLRMAVAIGLVIWVEMLLNKRVVVRVQPDDPNPLAGLTDPAI*
Ga0126381_10098966213300010376Tropical Forest SoilVARVYRKYWKVHPLRMAVAIGLVIWVEMLLNKRVVVRVQPDDPNPLAGLTDPAI*
Ga0126381_10255663813300010376Tropical Forest SoilIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLHQRVVVRVQPDEPNPLEGLTDPAT*
Ga0150983_1424979623300011120Forest SoilSGTAQIITDRSEVARVYRSYWKSHPLRMTILIGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPVT*
Ga0137393_1124126123300011271Vadose Zone SoilEFLTPGDSYKVKRARKNPRVMCYVGSKEGPAISGTAQIITDRSEVARVYRGYWKAHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0137399_1045709213300012203Vadose Zone SoilKDGPAISGTAQIITDRSEVARVYRGYWKAHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0137381_1049555013300012207Vadose Zone SoilDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0137379_1012164143300012209Vadose Zone SoilVKRVRKNPRVICYVGSKDGPTICGTAQIITDHSDVERVYRSYWKVHPLRMAIVIGLRVWIEMLLNKRVVVRVQPDHPNPLAGFTDPAI*
Ga0137379_1067595333300012209Vadose Zone SoilGSKDGPAIPGTARIITDRSEVARVYRGYWKTHPLRMALVIGLRLWIEMLLNKRVVVRVHPDEPNPLEGLSDPAS*
Ga0137372_1097237423300012350Vadose Zone SoilPGNSYKVKRVRKNPRVVCYVGSKDGPAIPGTARIITDRSEVARVYRGYWKTHPLPMAIVIGLRVWIEMLLNKRVVVRVHPDEPNPLEGLSDPAS*
Ga0137384_1006335233300012357Vadose Zone SoilVKRVRKNPRVICYVGSKDGPTICGTAQIIKDHSDVERVYRSYWKVHPLRMAIVIGLRVWIEMLLNKRVVVRVQPDDPNPLAGFTDPAI*
Ga0137360_1001940233300012361Vadose Zone SoilMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT*
Ga0137397_1063402423300012685Vadose Zone SoilVTGYVGSEDGPAISGTAQVITDRSAVARVYRSYWKTHPLPMAIVIGLRPWIEMLLNKRVVVRVQPDEPNPLAGLTDPVT*
Ga0164301_1117762923300012960SoilVNGGQIEFLTPGNSYKVKRARKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAMVIGLRVWIEMLLNKRVVVRVQPDEPNPLEGLTGPAT*
Ga0126369_1136311023300012971Tropical Forest SoilGPEISGTANIITDQSEVARVYRKYWKVHPLRMAVAIGLVIWVEMLLNKRVLVRVQPDDPNPLAGLTDPAI*
Ga0134081_1003014313300014150Grasslands SoilTAQIITDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVRPDEPNPLAGLTDPAA*
Ga0182015_1096314213300014495PalsaHVVCYVGGKNGPAIPGTAQVLTTRDELTRLTRVYRSYWKVHPLRMALMIGLRVWIEILLNKRVVVRIQPDDPNPLAGLTDPAS*
Ga0182032_1178282513300016357SoilRRNPRVICYVGSKKGPTISGTAQVITDRTEVERVYRKYWKAHPLRMAIIIGLRIWIEMLLNKRVVVRVQPDDPNPLAGLSDPAI
Ga0182038_1020981613300016445SoilIITDLSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPA
Ga0134074_118392423300017657Grasslands SoilPGNSYKVKRTRKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Ga0187818_1035714713300017823Freshwater SedimentPTISGTAQIITDRSEVARVYRSYWKVHPLRMAIVIGLRAWIEMLLNKRVVVRVQPDEPNPLAGLTDPAIRRVRCQLTQP
Ga0187801_1027162013300017933Freshwater SedimentMLGSNDGPAISGTAQIVTDRSEVARVYRGYWRTHPLRMAIIVGLRLWIEMLLNKRVVVRAQPDEPNPLAGLTDPAI
Ga0187821_1007992413300017936Freshwater SedimentVGSEDGPAISGTAQIITDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVRPDEPNPLEGLTDPAT
Ga0187821_1023173323300017936Freshwater SedimentPGNSYKVKRARRNPRVTCFVGSEDGPAISGTAQIITDRNEVARVYRGYWKTHPVPMAIMIGLRIWIEMLLNKRVVVRVQPDEPNPLAGLTDPATSLDSQPRVS
Ga0187819_1027146123300017943Freshwater SedimentMLGSNDGPAISGTAQIVTDRSEVARVYRGYWRTHPLRMAIIVGLRLWIEMLLNKRVVVRVQPDEPNSLAGLTDPAI
Ga0187819_1085094613300017943Freshwater SedimentVGSKDGLAISGTAQIITDRGEVAQVYRKYWKVHPLRMAILIGPRLWIEVLLNKRVVIRVQPDDPNPLEGLTDPAI
Ga0187879_1080929023300017946PeatlandAIAGTAQVITDKSEVARVYRSYWKIHPIRMAIVIGLRVWMEMLLNARVVVRVRPNEPNPVAGLSDPS
Ga0187817_1055162313300017955Freshwater SedimentISGTARIIKDRSEVARVYRNYWKTHPLRMAILIGLRLWIERLLNKRVVIRVQPDEPNPLDGLSDPAS
Ga0187778_1089362313300017961Tropical PeatlandRRNTRVICYVGSKDGPVISGTASIISERSEVIRVYRKYWKVHPLRMAILIGLRIGIELLLNRRVVIRVQPDEPNPFQGVTDPAN
Ga0187781_1147704513300017972Tropical PeatlandRNPRVICYVGSKNGPAIAGTAHIITEHREVSRVYRNYWKTHPVMMILLIGIRVWIEMLLGKRVVVRVQPDEPNPFAGFSDPAV
Ga0187815_1019153613300018001Freshwater SedimentSKDGPAISGTARIITDRSEVARVYRNYWKTHPLRMAILIGLRLWIERLLNKRVVVRVQPDEPNPLDGLTDPAN
Ga0187858_1032973713300018057PeatlandEFLTPGSSYKVKRVKRNPHVVCYVGSKDGPAIAGTAQVITDKSEVARVYRSYWKIHPIRMAIVIGLRVWMEMLLNARVVVRVRPNEPNPVAGLSDPS
Ga0187766_1007351413300018058Tropical PeatlandHPRVISFVGSPNGPAIWGTAEIISDRKEVSRVYRRYWRVHPIFMLLGVGLRIWIEMLLNQRVVVRVQPDAPNPLAGVSDPAN
Ga0210407_1035229623300020579SoilVKRARKNPRVTCYVGSEDGPAISGTAQIITDRSEVARVYRSYWKTHPLPMALMIGLRVWIEMLFNKRVVVRVQPDEPNPLAGLTDPVI
Ga0210407_1078386413300020579SoilIITDRSEVARVYRSYWKVHPLRMVIVIGLVVWIEMLLNKRVVVRVQPDEPNPLAGLTDPA
Ga0210399_1008544853300020581SoilDSYKVKRVRRNPQVISYVGSKNGPAIPGTAQVITGRAELMRVYRAYWKIHPIRMAIMIGLRVWIGILLNQRVVVRVQPDDPNPLAGLTDPVS
Ga0210395_1116039113300020582SoilSKDGPAISGTAQIITDGNEVMRVYLSYWKVHPVRMAIIIGLRVWIEMMLNKRVVVRVLPDQPNPVAGLTDPA
Ga0210401_1039045023300020583SoilENGPAIPGTAQVVATRVEIMRVYRAYWKTHPIMMALIIGLRVWIEILLNYRVVVRIQPDDPNPLAGINDPAP
Ga0210408_1139432423300021178SoilVKRVLRNPKVVCYVGSENGPAIAGRAEIIRDRSEVWRVYREYWKTHPLAMALIGLRITIEILAGQRVVVRTKPDEPNPLR
Ga0210393_1097868913300021401SoilEFLTPGNSYKVQRVRKNPRVICYVGSKSGPTIAGTAEVITDRGELMRVYRSYWKSHPFRMALMIGLRVWIEILLNQRVVVRVQPEDPDLLTGFADPAS
Ga0210389_1005747323300021404SoilVKRVRRNPQVISYVGSKNGPAVRGTAQVITSRAELMRVYRAYWKIHPIRMAIMIGLRVWIGILLNQRVVVRVQPDDPNPLAGLTDPVS
Ga0210394_1000000853300021420SoilVKRVRRNPRVICYVGSKDGPAISGTAQIITDVSEVARVYRSYWKVHPVRMAIIIGLRVWVEMLLNKRVVVRVQPDDPNPVAGLTDPA
Ga0210394_1134845023300021420SoilSGTAQIITDRSEVARVYRSYWKVHPLRMVIVIGLLVWIEMLLNKRVVVRVQPDEPNPLAGLTDPAM
Ga0210390_1026140243300021474SoilLVLNAGQIEFLTPGSSYKVKRVKRNPHVICYVGSKDGPAIAGTAQVITDKSEVARVYRSYWKIDPIHMAIVLGLRVWIEMLLNARVVVRVQPDEPNPVVGLSDPA
Ga0210392_1060609613300021475SoilSYKVKRVRRNPRVICYVGSKDGPAISGTAQIITDGNEVMRVYLSYWKVHPVRMAIIIGLRVWIEMMLNKRVVVRVLPDQPNPVAGLTDPA
Ga0210392_1098880413300021475SoilYKVKRVRRNPRVICYVGSENGPAIPGTAQVVATRVEIMRVYRAYWKTHPIMMALIIGLRVWIEILLNYRVVVRIQPDAPNPLAGINDPAP
Ga0210410_1123746413300021479SoilHQGQIEFLTPGDSYKVKRVRRNPRVICYVGSESGPAIPGTAQVVATRVEIMRVYRAYWKTHPIMMALIIGLRVWIEILLNYRVVVRIQPDDPNPLAGINDPAP
Ga0210409_1004916233300021559SoilPAIAGRAEIIRDRGEVWRVYREYWKTHPLAMALIGLRITIEILAGQRVVVRTKPDEPNPL
Ga0126371_1318976323300021560Tropical Forest SoilAISGTAQIITDRSEVARVYRSYWKVHPVRMAILIGLRIWIEMLLNKRVVVRIQPDEPNPLARPQYPGSADP
Ga0242665_1003694113300022724SoilNPKVVCYVGSENGPAIAGRAEIIRDRGEVWRVYREYWKTHPLAMALIGLRITIEILAGQRVVVRTKPDEPNPLR
Ga0224564_111311013300024271SoilRNPRVICYVGSKEGPTISGTAQIITDRSEVARVYRSYWKVHPLRMAIVIGLRVWIEMLLNKRVVVRVQPDEPNPLAGLSDPAI
Ga0247666_103769723300024323SoilISGTAQIVTEPSELARVYRGYWKVHPLRMAIIVGFRVWIEMLLNKRVVVRVQPDKPNPLAGLTDPGI
Ga0207684_1014436053300025910Corn, Switchgrass And Miscanthus RhizosphereDSYKVKRVRKNPRVVCYVGGKNGLAIEGTAQIVSDRGELGRVYRSYWKTHPLRMALIIGLRLWIEVLMNTRVVVRVQPDEPNPLAGYNDPAVPA
Ga0209688_111048913300026305SoilMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Ga0209265_102050443300026308SoilPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Ga0257150_102054723300026356SoilSEVARVYRGYWKTHPLPMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPAT
Ga0209157_1000056933300026537SoilTDRSEVARVYRGYWKTHPLPMAIMIGLRLWIEMLLNKRVVVRVRPDEPNPLAGLTDPAA
Ga0208732_103098913300026984Forest SoilDSYKVKRVRRNPHVISYVGGKNGPAIPGTAQVIATRDELMRVYRAYWKIHPIRMAIIIGLRLWIEILLNKRVVVRIQPDDPNPLAGLTDPAP
Ga0209214_100381323300027071Forest SoilVNGGQIEFLTPGNSYKVKRTRKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0209073_1009995213300027765Agricultural SoilISGTAQIITDRTELARVYRAYWKSHPVRMTIVIGLLIWVEMLLKKRVVVRVQPDEPNPLAGITDPAT
Ga0209580_1015898113300027842Surface SoilLLCGSNDGPAISGTAQIVTDRSEVARVYRGYWRTHPLRMAIVVGLRLWIEMLLNKRVVVRVQPDEPNPLAGWADPNH
Ga0209167_1000856643300027867Surface SoilVKRVRRDPRVICYVGSKDGPTISGTAQIITDRREVARVYRSYRKVHPLRMAIVIGLLVWIEMRLNKRVVVRVQPDEPNPLAGVSDPGI
Ga0209006_1048216913300027908Forest SoilEVVRVYRGYWRIHPLRMAIVVGFRIWIEMLLNKRVVIRVQPDEPNPLAGLTDPAI
Ga0137415_1014792543300028536Vadose Zone SoilVNGGQIEFLTPGNSYKVKRARKNPHVICYVGSKDGPAISGMAQIITNRSEVVRVYRGYWKTHPLRMAIVIGLQLWIEMLLNKRVVVRVQRDEPNPLEGLTDPAT
Ga0302225_1027266813300028780PalsaAHIITDRNEVARVYRSYWKVHPLRMAIVIGLRVWIEILLNKRVVVRVQPDEPNPLAGLSDPAI
Ga0302177_1059571413300030053PalsaITDRNEVARVYRSYWKVHPLRMAIVIGLRVWIEILLNKRVVVRVQPDEPNPLAGLSDPAI
Ga0307482_108047423300030730Hardwood Forest SoilLVVKDGQIEFLTPGSSYKVKRVERNPRIVCYVGSNDGPTISGAAQIITDRSEVARVYRSYWKVHPVRMAILIGLRVWIEMLLNKRVVVRVQPDEPNPLAGLNDPAT
Ga0170834_11172557313300031057Forest SoilVGSEDGPAISGTAQIITDRSEVARVYRSYWKSHPLRMALVIGLRVWIEMLLNKRVVVRVQPDEPNPLAGLTDPVT
Ga0170818_11422077623300031474Forest SoilPGDSYKVKRVRKNPRVVCYVGGKNGPAIEGTAQIVSDRGELGRVYRSYWKTHPLRMALIIGLRLWIEMLMNTRVVVRVQPDEPNPLAGFSDPAVPA
Ga0310686_10038147713300031708SoilTAQIITDRSEVARVYRDYWKAHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPAT
Ga0307476_1033116623300031715Hardwood Forest SoilTATTAPANPRIMCYVGSKDSPTISGAAQIITDRSEVARVYRSYWKVHPVRMAILIGLRVWIEMLLNKRVVVRVQPDEPNPLAGLNDPAT
Ga0307474_1093010623300031718Hardwood Forest SoilMCYVGSKDSPTISGAAQIITDRSEVARVYRSYWKVHPVRMAILIGLRVWIEMLLNKRVVVRVQPDEPNPLAGLNDPAT
Ga0306917_1017118623300031719SoilVGSKDGPAIPGTAQIITDLSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307477_1003146913300031753Hardwood Forest SoilSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307477_1014875813300031753Hardwood Forest SoilNSYKVKRTRKNPRVMCYVGSKDGPAISGTAQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Ga0307475_1011594913300031754Hardwood Forest SoilITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307475_1032609433300031754Hardwood Forest SoilTCYVGSEDGPAISGTAQIITDRSEVARVYRGYWKSHPLRMAILIGLRLWIEMLLNKRVVVRVQPDEPNPLAGLTDPVT
Ga0310913_1014873723300031945SoilGSKDGPAIPGTAQIITDLSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307479_1001093613300031962Hardwood Forest SoilQIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLEGLTDPAT
Ga0307479_1052388613300031962Hardwood Forest SoilARRNPRVTCYVGSEDGPAISGTAQIITDRSEVARVYRSYWKSHPLRMAIVIGLRLWIEMLLNKRVVVRVQPDEPNPLTGLTDPVT
Ga0307479_1057654933300031962Hardwood Forest SoilPDRSEVARVYRGYWKSHPLRMAILIGLRLWIEMLLNRRVVVRVQPDEPNPLAGLTDPVT
Ga0307479_1188634323300031962Hardwood Forest SoilIEFHTAGDSYKVRRVRKNPRVICYVGGKNGPAIAGTAHIVTDRTELGRVYRSYWKTHPLGMTLMIGLRVWIEMLLGKRVVVRVQPDEPNPLAGLSDPASPGK
Ga0310911_1078578623300032035SoilRTEVERVYRKYWKAHPLRMAIIIGLRIWIEMLLNKRVVVRVQPDDPNPLAGLSDPAI
Ga0318545_1012436513300032042SoilLTPGNSYKVKRARKNPRVVCFVGSKDGPAIPGTAQIITDLSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307471_10007837013300032180Hardwood Forest SoilISGTAKIITDRSEVARVYRGYWKTHPLRMAIVIGLRLWIEMLLKKRVVVRVQPDEPNPLEGLTDPAT
Ga0307471_10345711513300032180Hardwood Forest SoilTDRSEVARVYRSYWKSHPLRMAILIGLRLWIEMLLNKRVVVRVQPDDPNPLAGLTEPVT

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.