Scaffold Ga0193694_1000004

Overview

Basic Information

• Taxon OID: 3300021415
• Scaffold ID: Ga0193694_1000004
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536325
• Total Scaffold Genes: 436
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (17.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002819	Metagenome / Metatranscriptome	528	Y
F011141	Metagenome	294	Y
F011535	Metagenome / Metatranscriptome	290	Y
F013711	Metagenome	269	Y
F015187	Metagenome / Metatranscriptome	256	Y
F016074	Metagenome	250	Y
F020268	Metagenome	225	Y
F030133	Metagenome / Metatranscriptome	186	Y
F049710	Metagenome	146	Y
F051999	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193694_1000004100	F011535	N/A	MKKVMNKNNAIIIAVMAFISTSFSTPLLAMDKKTDPPVVEIKYLGFNDKNPVFEITISNVQVDNYYITVRGESGTALYSEKISGKNISRKYRIDTEEIIPEGGLRFEIRTGSTNKTEVYVAGTSETITREMAVNKIN
Ga0193694_1000004162	F049710	N/A	MRRRKMPHFIRLTRLAFKSVWYALTIPNDPYHEKEVNFWNMPKRKKVSERQYR
Ga0193694_1000004170	F002819	N/A	MPTTTCEISGTEYQLDYTKMNSKRGIYYFGKIHSQPITGFAFTALTSGGHEFDDSREPMHRQEAIVNAIKKSENQ
Ga0193694_1000004173	F016074	N/A	MNATFETIRRELKRYNAEDNEAPPKLVVAGKNAFLDIEHKRKRDSQFIIGVKEFFASEKNFIEKMIDDLEMRSGKRPLAFLYDEREVIETVIKDFEDYYNTTLSHDLFQKIEPSTGEGQVQFYLIIVVMEIYYYES
Ga0193694_1000004175	F051999	N/A	MKTFILILHAILFASIISAQNPEFPRSKKTDNRYWLLGLGLSIQNMYDEGISYVRYKGTGIAPSIGLIKSTEKKYCQFMLQPTFNKLTTDRSNELRPMEVRTTRFVLDYQYLVRVKEWNEKLKLFAGGNASLLFNLKRAEQLDNSQLVYDYALSIGPAAKLDKTVKWNKRECVAAFGLSIPLLSHIARPYYLNRIEFIDPQNDFLGDLFSNSSIVTVNKNFRITSGLSFTYPLFNKNELKLGYSWDFYKMTTINSVYAAEHLITISFLSNY
Ga0193694_1000004266	F020268	N/A	MSENHQNLTMEELVDILAQKTQKFTQLLVYKDFGNEYKECKETIRQILAEIEIRKEKTFNQQNKAASA
Ga0193694_1000004273	F013711	AGG	MRKILFLLFIVVVNTGYSQNPIQPVLKTYFRTHPFDMKFSGFITSLQQDPWFTIETYGRRTDTSSFFITGTYKNFNPFRFVPKELRLIVAEEEIIHNDSLKTHDTIMNLQLLAISDSGEINGKLVEKEFKRFHNSQANRFSSNTSNSYKEKDGSLTTKSYNYFVSPFSIAPVTIAWGILPGSNLYAFVITIRFKVKENTAVYVVSPGELYNLL
Ga0193694_1000004328	F015187	AGGAG	MKNCLLILLPAILLFSCHTMKKLNDGIYIQQRTSVNKDYPQLDSILIVANGNSSTKRIMEDVMPIFTADLKKRGVNSTAVFVSYTDKRINESEFNNMNYTYTLWIYEQDRALQKLDGYDYLVPLAMKLTDNRTSDNVWIATSIFNDIVKKKFYKEKYAGTLMLIFRANGIIK
Ga0193694_1000004375	F030133	N/A	MAEIHVQAKKSSSSTWLWILVSLIIIAAVAVYILMRDNTANEKAISKPTQTSFNVYNQEPAII
Ga0193694_100000461	F011141	N/A	MKKIRNIKDLENEKLALKVKQLELESRLDLSWKELREDLSRNNVAEQDQPETPFNLKTSNALLNGALNLGSILLGVIAGKTVGNAAEQILGRVGQKISSMVSKRSSAKNENLTR