Scaffold Ga0210383_10007698

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10007698
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9328
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F002289	Metagenome / Metatranscriptome	574	Y
F004291	Metagenome / Metatranscriptome	445	Y
F060240	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_100076983	F060240	AGGAG	MHSNVKNYSLIFCLFVFLFVIIGGGLHLNPGGAFLAAATGTPLMIYAFNRRSIGDCRPEHVPSRLAGNEVRYGSDRSDNSD
Ga0210383_100076986	F002289	AGGA	MFGQLMVEPVVHIGPGIDLQTAVGELLKLAENVEVVRWIELPASVLLFLLVPGDPDSGAVYVLDRQKGTWYAVDFEDEQFVGYSVRQLETLLKDCNFLDLIERPGLWRSGLRWVVMPGMRPEAAV
Ga0210383_100076988	F000092	GAG	VKQHLGRQSGVQTVEVSLLDGKVDVTPKEDGHIDPAQLLKATYDSGVTAAEMDMTARGKIVKDASGSLALQVAPNQSFTFAPNELSKGLESLAGTTTMVTVRGQLYKKSEGKKKPDPSTPLTLLILEVQKKE
Ga0210383_100076989	F004291	AGGAGG	MNRKNFALLILFGMMVGPMAQAQIKHIEMRVEGMT