Scaffold Ga0210385_10000021

Overview

Basic Information

• Taxon OID: 3300021402
• Scaffold ID: Ga0210385_10000021
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 252372
• Total Scaffold Genes: 216
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (59.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F001591	Metagenome / Metatranscriptome	667	Y
F027943	Metagenome / Metatranscriptome	193	Y
F043068	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210385_100000211	F043068	GAG	MSTRSSIWLGIDKGKSVHIYWELADRNIENGRMTGAPIYIAVDAGNADEEVAIRLPREIAIQLLMKLSPDWDDELGQVL
Ga0210385_10000021105	F027943	N/A	MGLLIVTAAVRILETMFVVGAIGSAVVLVLSGIEDLKLLLGLEEENRS
Ga0210385_1000002117	F001591	GGAG	MDRRKERRLNLELPVRIWGVDRLARPFAEIVRVRNISKSGAVLTGVRSKVQMGETLDVQLGASRAQFRIVWTGSSGEAGIQALEFEPPILGIGLPKVFEMVGTG
Ga0210385_1000002130	F000858	N/A	MISANPYLFAAYAATWIIHIGYLMTIVRRYARLKREIEEMRKAGVRP