Scaffold Ga0210393_10012154

Overview

Basic Information

• Taxon OID: 3300021401
• Scaffold ID: Ga0210393_10012154
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6702
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037313	Metagenome / Metatranscriptome	168	Y
F042445	Metagenome / Metatranscriptome	158	Y
F060168	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210393_100121543	F037313	GAGG	MSFKNQNVPSSPLPVRERIKVRVRLQRAIFLRAIQDSALLLLCALTLSACAQQGGGLLQPTPKQIVSGKNTIVPSAAALSMEATNFCNAQAQVDYAGLVLFCEGKTPAIPLSISTTYQTESTQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGVAPAPVAAPSGAAASAAAKG
Ga0210393_100121544	F042445	N/A	MLLLTASCAQVHEQMFTIDCAIGRPPLPGELAPGTAIALDVSTSPIPLLFPPHRAIARCDSAGVVTMNVETPVDTGLSQLSTPLSTAASHVTYVP
Ga0210393_100121546	F060168	N/A	MTGVVSCFHARAERPNRYLKKAFYRSKAFWGCVSTIVLIVGDMAANGVTLGNMMALTTAGFALYGRIVATAPLSITDQSEADVEEARADVRKSKVPVSADHGN