Scaffold Ga0224415_10219766

Overview

Basic Information

• Taxon OID: 3300021399
• Scaffold ID: Ga0224415_10219766
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_102197662	F057035	N/A	MTEKEFLEKRIPLWLEGEDLHVSTPSNMDKNNMHAFLSKKYGYNWLFCIRGYYWPGSHVCLYIGDYECPNCTTLVTSYLFSYFPDIKWIGFGLNKGEIGKMWKPKILVLRDDSYMNSDLCKIFE
Ga0224415_102197663	F064301	N/A	MAKTKGITARTVSGPTKIPPVWQIGILFPDGRKISKPKCTLNDVMETYFIGLDKHLNKNYDAETLLKLYQKTYNNKEIKVQINYIDSWGHKWTGKVAWPRESKFIEYLNKRINND
Ga0224415_102197665	F079361	AGTAG	MIYFTIAKNECGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVLKDQLNEIQD