Scaffold Ga0224415_10000019

Overview

Basic Information

• Taxon OID: 3300021399
• Scaffold ID: Ga0224415_10000019
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 276601
• Total Scaffold Genes: 307
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (16.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F048027	Metagenome / Metatranscriptome	148	Y
F057815	Metagenome / Metatranscriptome	135	Y
F082826	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224415_10000019144	F028722	N/A	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYGATHKDATSDGDAQGKGTGHGGHTHFLPDCTKPTNMINYSNFDTENGGGCYDIKGRNGISGRERALAISMYNKEQPYGAALVDTTANINDGQYFVGQQIGSPSSNCG
Ga0224415_10000019265	F048027	AGGAG	MAKKEKFSLDTRVRLVAENNGGKGVKMPIWFTLPQHKALRQQHIDICKKLVELSVANGNYPITYLVYFAVGKNAHRKEVFEDGYTKIDEKKAEKIFKWLTLFAKYHKNAKLFRNPNVAHALCRFYDKFSTKTKDFKAAMELMESNPKIDVKNAKSIVEGMGIAKKPKEEAEVEAAEAAMAVVTA
Ga0224415_10000019268	F082826	N/A	MHKYTIQMNYNASIVVEVNASDEGEALDKARDKAEDADIRQFTLGSENESKILRTE
Ga0224415_1000001950	F057815	N/A	MANKVYKDSDILNAMVMHLDEDSVVFGANGHYAIGAYYDITQVSSVFGDKEYNSQDNIDSASATTAAELYRTNNDEFDENIQNAYWLKNY