Scaffold Ga0213868_10175570

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10175570
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023607	Metagenome / Metatranscriptome	209	Y
F062182	Metagenome / Metatranscriptome	131	N
F069331	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_101755701	F069331	N/A	MSKYFKEIETNMSKEFLFVLDEAREIAGIPFVINS
Ga0213868_101755702	F062182	AGGAG	MAEMQFRLAADLSNFFNKQELFNQRISDILENDEKTDKKGLVYEVAEVSKRVDEIEIKNKVTAGKIAVSVTILTFIGSAVWKLINIFD
Ga0213868_101755703	F023607	N/A	MHIYKLVFETEQQGKQVLIDNNVWEEVTEEGVTTLRYINGTKGVVYIGKVIKTQGTYDPDGHEITPPIYYDGVAYDVMSTDELELEQYRVYPNGSAAHQFYGYKRDDDK