Scaffold Ga0213868_10002353

Overview

Basic Information

• Taxon OID: 3300021389
• Scaffold ID: Ga0213868_10002353
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18198
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006848	Metagenome / Metatranscriptome	363	N
F016397	Metagenome / Metatranscriptome	247	Y
F026567	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213868_1000235311	F026567	N/A	MKILKILFLVVLAIVAIPVGIVYSFGESLFFIASDVLKSIWRAIYDLFRDVSIIVSVTASKFLNRLLMDSGVPFGNHSVSAVLGANQRERTLTGLGLWLTLLLDSIEENHCRKASERAGI
Ga0213868_1000235315	F006848	N/A	MELKLPHRWSDLSLGELQVMMTADNPLEKISICSGYSVEKLRAMPQKLIEAASAHLDNLLTQETARHEKVVEMDGKRFGFIPNWDEFTAGEWIDMENHLEDFWANAHKITALLYRQVTYELGDKYEIKKYTAKEDASVFEEMPADLVSGMLLFFWTSRNQLLHDMQLSLLEVADKAIQSAKNGDGITSSIPSPGKTSSRWTRLRNSLFKSYSNTSAI
Ga0213868_100023537	F016397	N/A	MRNLDNHRYIGEAIQLLQNKGEKVKVPFWFKALDWFLTFAYIFGLAYLLYISIKWLILKIYF