Scaffold Ga0223845_11189228

Overview

Basic Information

• Taxon OID: 3300021387
• Scaffold ID: Ga0223845_11189228
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 179940
• Total Scaffold Genes: 354
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 247 (69.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065312	Metagenome / Metatranscriptome	127	Y
F072829	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223845_11189228113	F072829	AGGAGG	MKNFYDQLIDEYFKRHPDAGLAWWMLPLKDQPEGFKQEMYDIMWDLTHKEDSNG
Ga0223845_11189228326	F065312	AGGAG	MSKRTKKQQPKTWVEVFQSERKEFPQGYCVTRIIPDKRFKKPKHKGKEFDE