Scaffold Ga0213869_10015174

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10015174
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4463
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023113	Metagenome / Metatranscriptome	211	Y
F029484	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100151744	F023113	GAG	MPKKNEPETMPKPYVESGNIEAHIIADMLRIESITAELKEFKEVTRDRLNKLESWIIAIVGLTFTTLMTTVVGLLMKIL
Ga0213869_100151746	F010848	AGGAG	MAQSDRRAAAAGEFIGKDVFLKSFTQQSGNISATQLTALVSSVQNLNLSVLKVGAVSGAAVNMIVEGADNLANGDLAGHVIADVSF
Ga0213869_100151747	F029484	AGGAG	MAQSNPNAAVRAANGFVGTTHILEVDDVTSVTVEAACTEAQVEGFVVVAVEGLTSGSHIAVQGAGATPSIAGATLIATFS