NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10013000

Scaffold Ga0213869_10013000


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10013000 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4899
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F045851Metagenome / Metatranscriptome152Y
F046001Metagenome / Metatranscriptome152N
F051139Metagenome / Metatranscriptome144Y
F061271Metagenome / Metatranscriptome132N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1001300010F037230N/AMKNLTEEYVNIDWSGICEDFNLDSGDISPEQSFEMDRALGNINEVLHKFIEQNKPTVMIGNELTKSEYNVLMVSLDHMYEHLDDMRGDFDGDEDNEIDNLKRIADVRSLQKLFKQ
Ga0213869_1001300013F051139N/AMQKAELELSVKQFHQLHDLLGDILDHEAETNDFNMENSDIELMEDIRHELFNQIPDEKPIETTYAFTTAVDAHRVTPLKLYEIKKCSDGSGFIIKNDRRSEVYCIEKGCSHLSSNQSENWNLITITND
Ga0213869_1001300014F061271N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDQGMTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNAKKCYKSECCR
Ga0213869_1001300015F092077N/AMNKELSPLQRSFDRINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0213869_1001300016F005129N/AMNYKVKIESRTLSINLMHHSTIDLGVFAVKATTHSFLFEDKDPEWGADINETELEFYVNDKRCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKRIVKEYPGTDVNF
Ga0213869_100130002F046001N/AMTKILFNTMYKTINDITNSNKLNRPVHITYGGLIADNSDVETITKILDREIIKYKLKSI
Ga0213869_100130003F045851N/AMTLQDHNTINELIKFYQKNRSEADYKKGIQPIDGHKIDSLMMANYLQGKELDLNIY
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