Scaffold Ga0213869_10010324

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10010324
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5610
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006798	Metagenome / Metatranscriptome	364	Y
F017499	Metagenome / Metatranscriptome	240	Y
F087903	Metagenome / Metatranscriptome	110	Y
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1001032410	F096215	N/A	MADFKTGDKVAWVAEMVCVPHPEGKTDRNGEVLPVFRDKKMTGTVVNSCYDDRYTIRPDGTTTPKDIPSYYDKMVAGRKLSKI
Ga0213869_100103242	F006798	N/A	MDLRFITEDEVVNFIDGMDEVSTDSILSDPAIVELLEGSVPQQIADHSNPLGTIESFLQLFIDREEYEVCADLVKAVPELCKY
Ga0213869_100103246	F087903	N/A	MINTGREWDFMEDEVQIEEILTEANAYNLKQEVITTAEVFMKDDPELNKVIAYEMAYMEWIK
Ga0213869_100103248	F017499	N/A	MSRYNSRMHGITNDVKVDLNWGFDHVLGYWYDIIETRDGEERIVEEWNSAMGGSRSKMLEFLIKYNCPEDHRSAVGLDMQF