Scaffold Ga0213869_10009624

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10009624
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5842
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009440	Metagenome	318	Y
F040177	Metagenome	162	Y
F044199	Metagenome	155	N
F065802	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100096242	F065802	GAGG	MIVLGKTPKEWRKEIGSKSLYYRAEIVIFLIGFILGSVIF
Ga0213869_100096244	F009440	AGGA	MKAKNYKSITEILEKKYQCKFYLFMDLKDCENRIKQKRKDQ
Ga0213869_100096245	F040177	N/A	MKNTNKKEIENFKKYVWSFYGEDQGLYKDFFGNNLKMKEVERAIQIRLSNMKLEFDGDSIDREIVRDIIYKMRDPQAKTEHEFKFKIERK
Ga0213869_100096246	F044199	N/A	MTQKETIKIIKDAYSSLRVLNNIDWKSYRDDIYNLEKQYEKNHRNYCDGREFNITVDLAAKLFVVQHIASALKGTRHDVKSYIYLKQSIFLAESLVINYEDKIKEALKDFDLNQLCDLDYSFLIEKKAA