Scaffold Ga0213869_10008563

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10008563
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6256
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F015402	Metagenome / Metatranscriptome	255	Y
F016004	Metagenome / Metatranscriptome	250	Y
F070147	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100085635	F013232	N/A	MSDREISNSKSGVPMWWKPGISFLKEEWINHPHLKQFRNKKSTDRKCDCESPKLVNLWEHDSCVRGRIDTDVCVKCNEVESFSIIR
Ga0213869_100085636	F070147	N/A	MKDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0213869_100085637	F016004	GGTGG	MNEELLKILETLKEDFEMLQDGRWDLNYSDGSEIQASLDNVEKAINIIKNNE
Ga0213869_100085638	F006200	GAG	MSDWMERLVKKYSVPTNDTTDKRGMLNETQLNNLRNGKDKKTT
Ga0213869_100085639	F015402	N/A	MGKIKKLLDFQFDFELNQEDIDEELMTRNDYDYQYEKWLKSKEFVEYVNGELDSTRPRYSEHDIMSATRYASEYITIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWTTKNT