Metagenome / Metatranscriptome Family F070147

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F070147
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	50 residues
Representative Sequence	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Number of Associated Samples	107
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	21.95 %
% of genes near scaffold ends (potentially truncated)	32.52 %
% of genes from short scaffolds (< 2000 bps)	78.86 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (51.220 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (15.447 % of family members)
Environment Ontology (ENVO)	Unclassified (75.610 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.187 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.75% β-sheet: 0.00% Coil/Unstructured: 46.25%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.88467
f.13.1.1: Bacteriorhodopsin-like	d1xioa_	1xio	0.87831
f.13.1.1: Bacteriorhodopsin-like	d6s6ca_	6s6c	0.87525
a.25.1.0: automated matches	d4cyba_	4cyb	0.86992
a.25.1.1: Ferritin	d2cf7a_	2cf7	0.859

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00303	Thymidylat_synt	8.94
PF00970	FAD_binding_6	7.32
PF01555	N6_N4_Mtase	4.88
PF00156	Pribosyltran	4.88
PF00118	Cpn60_TCP1	2.44
PF08406	CbbQ_C	2.44
PF00175	NAD_binding_1	1.63
PF13640	2OG-FeII_Oxy_3	0.81
PF13673	Acetyltransf_10	0.81
PF10985	DUF2805	0.81
PF08707	PriCT_2	0.81
PF01521	Fe-S_biosyn	0.81
PF01467	CTP_transf_like	0.81
PF01048	PNP_UDP_1	0.81
PF00271	Helicase_C	0.81
PF03819	MazG	0.81
PF13385	Laminin_G_3	0.81
PF06831	H2TH	0.81
PF01041	DegT_DnrJ_EryC1	0.81
PF02525	Flavodoxin_2	0.81
PF00856	SET	0.81
PF09834	DUF2061	0.81
PF00583	Acetyltransf_1	0.81
PF07728	AAA_5	0.81
PF00478	IMPDH	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	8.94
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	4.88
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	4.88
COG0863	DNA modification methylase	Replication, recombination and repair [L]	4.88
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.44
COG0714	MoxR-like ATPase	General function prediction only [R]	2.44
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.81
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.81
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.81
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.81
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.81
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.81
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.81
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.81
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.81
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
All Organisms	root	All Organisms	48.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
cellular organisms	root	All Organisms → cellular organisms	25.20 %
Viruses	superkingdom	All Organisms → Viruses	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.63 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.13 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.25 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	1.63 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.13 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.81 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	8.13 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.81 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	8.13 %
Bacteroidetes Order II. Incertae sedis	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.81 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.13 %
Rhodothermaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.81 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.13 %
unclassified Rhodothermaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.81 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.76 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.13 %
Rhodothermaceae bacterium TMED105	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105	3.25 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.63 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.81 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10035399	All Organisms → Viruses → Predicted Viral	2685	Open in IMG/M
3300000117\|DelMOWin2010_c10010365	Not Available	5291	Open in IMG/M
3300000149\|LPaug09P1610mDRAFT_c1019181	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300001344\|JGI20152J14361_10040685	All Organisms → Viruses → Predicted Viral	1355	Open in IMG/M
3300001346\|JGI20151J14362_10167235	Not Available	637	Open in IMG/M
3300001957\|GOS2250_1005066	All Organisms → Viruses → Predicted Viral	1445	Open in IMG/M
3300001965\|GOS2243_1079599	Not Available	2259	Open in IMG/M
3300004457\|Ga0066224_1080321	Not Available	931	Open in IMG/M
3300005057\|Ga0068511_1006488	All Organisms → Viruses → Predicted Viral	1438	Open in IMG/M
3300005086\|Ga0072334_11188985	Not Available	500	Open in IMG/M
3300005239\|Ga0073579_1190067	Not Available	44038	Open in IMG/M
3300005837\|Ga0078893_10255790	All Organisms → cellular organisms → Bacteria	5485	Open in IMG/M
3300005837\|Ga0078893_10379937	Not Available	4820	Open in IMG/M
3300006027\|Ga0075462_10178253	Not Available	644	Open in IMG/M
3300006401\|Ga0075506_1487483	Not Available	901	Open in IMG/M
3300006402\|Ga0075511_1660727	Not Available	584	Open in IMG/M
3300006402\|Ga0075511_1675659	Not Available	556	Open in IMG/M
3300006404\|Ga0075515_10863953	Not Available	588	Open in IMG/M
3300006405\|Ga0075510_11024985	Not Available	676	Open in IMG/M
3300006425\|Ga0075486_1631703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	860	Open in IMG/M
3300006735\|Ga0098038_1062287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1331	Open in IMG/M
3300006735\|Ga0098038_1088150	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
3300006789\|Ga0098054_1362277	Not Available	513	Open in IMG/M
3300007655\|Ga0102825_1136370	Not Available	509	Open in IMG/M
3300007718\|Ga0102852_1007089	Not Available	1941	Open in IMG/M
3300007954\|Ga0105739_1177543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	512	Open in IMG/M
3300009071\|Ga0115566_10465834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	720	Open in IMG/M
3300009433\|Ga0115545_1122979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	923	Open in IMG/M
3300009437\|Ga0115556_1180565	Not Available	767	Open in IMG/M
3300009437\|Ga0115556_1182456	Not Available	762	Open in IMG/M
3300009442\|Ga0115563_1114492	All Organisms → Viruses → Predicted Viral	1130	Open in IMG/M
3300009445\|Ga0115553_1391610	Not Available	529	Open in IMG/M
3300009472\|Ga0115554_1051799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105	1856	Open in IMG/M
3300009476\|Ga0115555_1314929	Not Available	629	Open in IMG/M
3300009498\|Ga0115568_10082578	Not Available	1620	Open in IMG/M
3300009508\|Ga0115567_10277847	Not Available	1056	Open in IMG/M
3300009543\|Ga0115099_10315980	All Organisms → Viruses → Predicted Viral	1895	Open in IMG/M
3300009677\|Ga0115104_10294505	Not Available	589	Open in IMG/M
3300009790\|Ga0115012_10171918	Not Available	1573	Open in IMG/M
3300012525\|Ga0129353_1251255	All Organisms → Viruses → Predicted Viral	1549	Open in IMG/M
3300012528\|Ga0129352_11032475	Not Available	860	Open in IMG/M
3300012920\|Ga0160423_10046607	All Organisms → cellular organisms → Bacteria	3160	Open in IMG/M
3300012920\|Ga0160423_10073790	All Organisms → Viruses → Predicted Viral	2437	Open in IMG/M
3300012936\|Ga0163109_10581212	Not Available	820	Open in IMG/M
3300012936\|Ga0163109_11245074	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300017706\|Ga0181377_1004646	All Organisms → Viruses → Predicted Viral	3746	Open in IMG/M
3300017706\|Ga0181377_1013589	All Organisms → Viruses → Predicted Viral	1901	Open in IMG/M
3300017706\|Ga0181377_1080947	Not Available	578	Open in IMG/M
3300017708\|Ga0181369_1032302	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105	1228	Open in IMG/M
3300017717\|Ga0181404_1012757	All Organisms → Viruses → Predicted Viral	2203	Open in IMG/M
3300017717\|Ga0181404_1083917	Not Available	786	Open in IMG/M
3300017719\|Ga0181390_1041797	All Organisms → Viruses → Predicted Viral	1383	Open in IMG/M
3300017724\|Ga0181388_1019862	Not Available	1686	Open in IMG/M
3300017725\|Ga0181398_1135400	Not Available	586	Open in IMG/M
3300017726\|Ga0181381_1004186	All Organisms → Viruses → Predicted Viral	3652	Open in IMG/M
3300017728\|Ga0181419_1062481	Not Available	953	Open in IMG/M
3300017729\|Ga0181396_1085090	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	640	Open in IMG/M
3300017741\|Ga0181421_1048009	Not Available	1137	Open in IMG/M
3300017742\|Ga0181399_1108544	Not Available	683	Open in IMG/M
3300017750\|Ga0181405_1091374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	772	Open in IMG/M
3300017752\|Ga0181400_1128300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	729	Open in IMG/M
3300017755\|Ga0181411_1095664	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105	880	Open in IMG/M
3300017756\|Ga0181382_1046834	Not Available	1257	Open in IMG/M
3300017762\|Ga0181422_1024841	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105	1960	Open in IMG/M
3300017762\|Ga0181422_1154896	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	701	Open in IMG/M
3300017763\|Ga0181410_1149009	Not Available	658	Open in IMG/M
3300017769\|Ga0187221_1054989	Not Available	1273	Open in IMG/M
3300017771\|Ga0181425_1008204	All Organisms → cellular organisms → Bacteria	3542	Open in IMG/M
3300017818\|Ga0181565_10609508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	699	Open in IMG/M
3300017824\|Ga0181552_10126220	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300017968\|Ga0181587_10375133	Not Available	944	Open in IMG/M
3300018049\|Ga0181572_10762083	Not Available	579	Open in IMG/M
3300020165\|Ga0206125_10002460	All Organisms → cellular organisms → Bacteria	19514	Open in IMG/M
3300020165\|Ga0206125_10059643	All Organisms → Viruses → Predicted Viral	1791	Open in IMG/M
3300020165\|Ga0206125_10125269	Not Available	1057	Open in IMG/M
3300020264\|Ga0211526_1000011	Not Available	47966	Open in IMG/M
3300020264\|Ga0211526_1033653	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300020282\|Ga0211667_1019407	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300020336\|Ga0211510_1069370	Not Available	838	Open in IMG/M
3300020377\|Ga0211647_10040258	All Organisms → Viruses → Predicted Viral	1759	Open in IMG/M
3300020378\|Ga0211527_10093729	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300020396\|Ga0211687_10301574	Not Available	631	Open in IMG/M
3300020400\|Ga0211636_10412982	Not Available	503	Open in IMG/M
3300020403\|Ga0211532_10137599	All Organisms → Viruses → Predicted Viral	1011	Open in IMG/M
3300020404\|Ga0211659_10037512	All Organisms → Viruses → Predicted Viral	2326	Open in IMG/M
3300020430\|Ga0211622_10060818	All Organisms → Viruses → Predicted Viral	1662	Open in IMG/M
3300020438\|Ga0211576_10200364	All Organisms → Viruses → Predicted Viral	1064	Open in IMG/M
3300020451\|Ga0211473_10003872	All Organisms → cellular organisms → Bacteria	7414	Open in IMG/M
3300020457\|Ga0211643_10051529	All Organisms → Viruses → Predicted Viral	2054	Open in IMG/M
3300020463\|Ga0211676_10698645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	503	Open in IMG/M
3300020469\|Ga0211577_10200199	Not Available	1315	Open in IMG/M
3300021085\|Ga0206677_10010714	All Organisms → cellular organisms → Bacteria	6344	Open in IMG/M
3300021085\|Ga0206677_10024003	All Organisms → cellular organisms → Bacteria	3584	Open in IMG/M
3300021185\|Ga0206682_10027357	All Organisms → Viruses → Predicted Viral	3458	Open in IMG/M
3300021335\|Ga0213867_1000032	Not Available	62384	Open in IMG/M
3300021365\|Ga0206123_10094974	All Organisms → Viruses → Predicted Viral	1432	Open in IMG/M
3300021373\|Ga0213865_10233334	Not Available	891	Open in IMG/M
3300021375\|Ga0213869_10008563	Not Available	6256	Open in IMG/M
3300022909\|Ga0255755_1124784	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300024229\|Ga0233402_1050342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	885	Open in IMG/M
3300024348\|Ga0244776_10282534	All Organisms → Viruses → Predicted Viral	1141	Open in IMG/M
3300024348\|Ga0244776_10535327	Not Available	750	Open in IMG/M
3300025086\|Ga0208157_1126196	Not Available	588	Open in IMG/M
3300025137\|Ga0209336_10059864	Not Available	1155	Open in IMG/M
3300025151\|Ga0209645_1172352	Not Available	655	Open in IMG/M
3300025626\|Ga0209716_1152594	Not Available	596	Open in IMG/M
3300025632\|Ga0209194_1120610	Not Available	643	Open in IMG/M
3300025640\|Ga0209198_1177182	Not Available	564	Open in IMG/M
3300025653\|Ga0208428_1042460	All Organisms → Viruses → Predicted Viral	1406	Open in IMG/M
3300025654\|Ga0209196_1136195	Not Available	689	Open in IMG/M
3300025696\|Ga0209532_1077728	Not Available	1210	Open in IMG/M
3300025712\|Ga0209305_1023246	All Organisms → Viruses → Predicted Viral	2399	Open in IMG/M
3300025822\|Ga0209714_1104632	Not Available	780	Open in IMG/M
3300025881\|Ga0209309_10235058	Not Available	862	Open in IMG/M
3300025892\|Ga0209630_10233797	Not Available	873	Open in IMG/M
3300025897\|Ga0209425_10136994	All Organisms → Viruses → Predicted Viral	1386	Open in IMG/M
3300025897\|Ga0209425_10393993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	665	Open in IMG/M
3300027774\|Ga0209433_10019805	All Organisms → Viruses → Predicted Viral	2247	Open in IMG/M
3300028111\|Ga0233397_1104391	Not Available	706	Open in IMG/M
3300028129\|Ga0228634_1122561	Not Available	546	Open in IMG/M
3300028279\|Ga0228613_1149780	Not Available	543	Open in IMG/M
3300029448\|Ga0183755_1001407	Not Available	13679	Open in IMG/M
3300032011\|Ga0315316_10117062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2192	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.19%
Unclassified	Environmental → Aquatic → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	17.07%
Pelagic	Environmental → Aquatic → Marine → Pelagic	17.07%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	15.45%
Strait	Environmental → Aquatic → Marine → Strait	15.45%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.20%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.50%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	17.07%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	17.07%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	15.45%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	15.45%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	11.38%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.50%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.88%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	4.06%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.06%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.25%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	15.45%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	15.45%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	13.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	9.76%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	8.13%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.69%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	4.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.06%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.25%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	3.25%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.25%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	3.25%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.63%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.63%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.63%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.81%
Marine Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water	0.81%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.81%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.81%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.81%
Water	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000149	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m	Environmental	Open in IMG/M
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001957	Marine microbial communities from Wolf Island, Equador - GS035	Environmental	Open in IMG/M
3300001965	Marine microbial communities from Coastal Floreana, Equador - GS028	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300005057	Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um	Environmental	Open in IMG/M
3300005086	Microbial Community from Halfdan Field MHDA3	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006401	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006402	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006405	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006425	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300007655	Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579	Environmental	Open in IMG/M
3300007718	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3	Environmental	Open in IMG/M
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009543	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012525	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012528	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental	Open in IMG/M
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental	Open in IMG/M
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental	Open in IMG/M
3300020282	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)	Environmental	Open in IMG/M
3300020336	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300022909	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG	Environmental	Open in IMG/M
3300024229	Seawater microbial communities from Monterey Bay, California, United States - 54D	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025626	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025640	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025654	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025712	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)	Environmental	Open in IMG/M
3300025822	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300027774	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)	Environmental	Open in IMG/M
3300028111	Seawater microbial communities from Monterey Bay, California, United States - 35D	Environmental	Open in IMG/M
3300028129	Seawater microbial communities from Monterey Bay, California, United States - 42D	Environmental	Open in IMG/M
3300028279	Seawater microbial communities from Monterey Bay, California, United States - 14D	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100353994	3300000101	Marine	MKDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
DelMOWin2010_100103654	3300000117	Marine	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGVK*
LPaug09P1610mDRAFT_10191815	3300000149	Marine	KDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
JGI20152J14361_100406853	3300001344	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGIK*
JGI20151J14362_101672352	3300001346	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
GOS2250_10050664	3300001957	Marine	MKDVLILILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK*
GOS2243_10795994	3300001965	Marine	MKDVLLLILEAASVDMKRRCEQNSDEESRDTYGKWHGQIVTMIDTIKRGGIK*
Ga0066224_10803212	3300004457	Marine	MKDVLIMILKAAMIDMKRRCEQNSDEGSRDIYGKWHGQIKTMVDTIENGGVK*
Ga0068511_10064882	3300005057	Marine Water	MSKQLNMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK*
Ga0072334_111889852	3300005086	Water	MKDVLIMILKAAMVVMKRRCEQNSDEGSRDTYGKWHGQIKTMVDTIE
Ga0073579_119006735	3300005239	Marine	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK*
Ga0078893_102557902	3300005837	Marine Surface Water	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIITMIDTIKNGGVK*
Ga0078893_103799372	3300005837	Marine Surface Water	MKDVLLLILEAVSVDLKRRCEQNSDEQSRDTYGKWHGQIKTMIDTIERGGVKTKNY
Ga0075462_101782534	3300006027	Aqueous	MKDVLLLILEAVSVDMKRRCEQNSDEESRDTYGKWHGQIITMINTIKNGGVK*
Ga0075506_14874834	3300006401	Aqueous	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIITMINTIKNGGVK*
Ga0075511_16607272	3300006402	Aqueous	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIVTMIDTIKNGGIK*
Ga0075511_16756592	3300006402	Aqueous	DFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK*
Ga0075515_108639531	3300006404	Aqueous	HLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK*
Ga0075510_110249852	3300006405	Aqueous	MKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK*
Ga0075486_16317033	3300006425	Aqueous	MKDVLLLILEAVSVDMKRRCEQNSDEESRDTYGKWHGQIVTMIDTIKNGGIK*
Ga0098038_10622875	3300006735	Marine	MKDVLLLILEAAAVDMKRRCEQNSDEESRDTYGKWHGQIVNMMDTIKRGGIK*
Ga0098038_10881503	3300006735	Marine	MSKQLNMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGMIEDMINTIESGGVK*
Ga0098054_13622772	3300006789	Marine	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
Ga0102825_11363703	3300007655	Estuarine	MKDLVLVILKGVMIDFKRRCEQNTDEQSRDTYGKWHGQIKNMVDTIERGGIK*
Ga0102852_10070895	3300007718	Estuarine	MKDVILLILEAVLIDFKRRCEQNSDEESRDTYCKWHGQIKTMIDTIENGGVK*
Ga0105739_11775432	3300007954	Estuary Water	MKDVILLILEAVLIDFKRRCEQNSDEESRDTYGKWHGQIKTMIDTIENGGVK*
Ga0115566_104658343	3300009071	Pelagic Marine	MKDVLLLILEAASVDIKRRCEQNSDEESRDTYGKWHGQIITMINTIKNGGIK*
Ga0115545_11229794	3300009433	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK*
Ga0115556_11805652	3300009437	Pelagic Marine	MKDVLVLILKAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
Ga0115556_11824561	3300009437	Pelagic Marine	VLLLILEAASVDIKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
Ga0115563_11144923	3300009442	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKT
Ga0115553_13916101	3300009445	Pelagic Marine	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIENGGIK*
Ga0115554_10517996	3300009472	Pelagic Marine	MKDVLVLILKAAMVDMKRRCEQKSDEGSREIYGKWHGQIKTMIDTIKNGGVK*
Ga0115555_13149292	3300009476	Pelagic Marine	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIKNGGIK*
Ga0115568_100825785	3300009498	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIITMINTIKNGGIK*
Ga0115567_102778474	3300009508	Pelagic Marine	DMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK*
Ga0115099_103159807	3300009543	Marine	MKDSMVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKEMIDRIENGGVK*
Ga0115104_102945053	3300009677	Marine	MKDVLVLILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKEMIDRIENGGVK*
Ga0115012_101719182	3300009790	Marine	MKDVLLLILEAAMIDMKRRCEQDTCEQSRDTYGKWHGQLKNMVDNIQNGKV*
Ga0129353_12512551	3300012525	Aqueous	LEAASVDMKRRCEQNTCEESRDTYGKWHGQIVTMIDTIKNGGIK*
Ga0129352_110324751	3300012528	Aqueous	KQLNMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK*
Ga0160423_100466074	3300012920	Surface Seawater	MKDVLLLILEAALVDFKRRCEQNTCEESRDTYGKWHGQIKNMIDTIERGGIK*
Ga0160423_100737902	3300012920	Surface Seawater	MKEVLILILEAAMVDMKRRCEQNTCEQSRDTYGKWHDQIKNMVDTIQSGGVK*
Ga0163109_105812123	3300012936	Surface Seawater	MKDVLLLILEAASVDLKRRCEQNTDEQSRDIYGKWHGQIITMIDTIKRGGVK*
Ga0163109_112450742	3300012936	Surface Seawater	MKEVLILILEAAMVDMKRRCEQNTCEQSRDTYGKWHDQIKNMVNTIQSGGVK*
Ga0181377_10046463	3300017706	Marine	MKDVLIMILKAAMIDMKRRCEQNSDEGSRDIYGKWHGQIKTMVDTIENGGVK
Ga0181377_10135893	3300017706	Marine	MKDVLVLILKAAMVDMKRRCEQNTDEGSRDIYGKWHGQIKTMIDTIENGGVK
Ga0181377_10809473	3300017706	Marine	MKDLVLVILKGVMIDFKRRCEQNSDEGSRDIYGKWHGQIKTMVNTIENGGVK
Ga0181369_10323025	3300017708	Marine	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMVNTIENGGVK
Ga0181404_10127573	3300017717	Seawater	MKDLVLVILKGVMIDFKRRCEQNSDEGSRDTYGKWHGQIKEMIDTIENGGVK
Ga0181404_10839172	3300017717	Seawater	MKDVLVLILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKEMIDRI
Ga0181390_10417971	3300017719	Seawater	MKDVLVLILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIIL
Ga0181388_10198626	3300017724	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQ
Ga0181398_11354001	3300017725	Seawater	MKDLVLVILKGVMIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0181381_10041866	3300017726	Seawater	MKDVLVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0181419_10624813	3300017728	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMID
Ga0181396_10850901	3300017729	Seawater	FKRRCEQNSDEESRDTYGKWHGQIKTMIDTIENGGVK
Ga0181421_10480093	3300017741	Seawater	LVLILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0181399_11085442	3300017742	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKEMIDTIENGGVK
Ga0181405_10913743	3300017750	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIK
Ga0181400_11283002	3300017752	Seawater	MKDVILLILEAVLIDFKRRCEQNSDEESRDTYGKWHGQIKTMIDTIENGGVKXTRSY
Ga0181411_10956641	3300017755	Seawater	GVMIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0181382_10468341	3300017756	Seawater	MVDMKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0181422_10248417	3300017762	Seawater	MVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKEMIDRIENGGVK
Ga0181422_11548961	3300017762	Seawater	GVMLDFKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0181410_11490093	3300017763	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKNMVDTIERGGIK
Ga0187221_10549891	3300017769	Seawater	ILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0181425_10082041	3300017771	Seawater	MKDSMVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVSL
Ga0181565_106095083	3300017818	Salt Marsh	MKDVLLLILEAASVDMKRRCEQNTDEQSRDTYSKWHDQIINMIDTIKNGGVK
Ga0181552_101262203	3300017824	Salt Marsh	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIINMIDTIKNGGVK
Ga0181587_103751335	3300017968	Salt Marsh	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIINMIDTIKNGGVKXTKSY
Ga0181572_107620832	3300018049	Salt Marsh	MKDVLLLILEAASVDLKRRCEQNTDEQSRDIYGKWYGQIITMIDTIKSGGVK
Ga0206125_100024603	3300020165	Seawater	MKDVLLLILEAASVDIKRRCEQNSDEESRDTYGKWHGQIITMINTIKNGGIK
Ga0206125_100596434	3300020165	Seawater	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0206125_101252692	3300020165	Seawater	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK
Ga0211526_10000119	3300020264	Marine	MSKQLNMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK
Ga0211526_10336532	3300020264	Marine	MKEVLILILEAAMVDMKRRCEQNTCEQSRDTYGKWHDQIKNMVDTIQSGGVK
Ga0211667_10194075	3300020282	Marine	MKDVLLLILEAALVDFKRRCEQNTCEESRDTYGKWHGQIKNMIDTIERGGIK
Ga0211510_10693702	3300020336	Marine	MKDVLVLILKAAMVDMKRRCEQNSDEESRDTYGKWHGQIKTMI
Ga0211647_100402584	3300020377	Marine	MSKQLNMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGMIEDMINTIESGGVK
Ga0211527_100937293	3300020378	Marine	MKDVLILILKAAMIDMKRRCEQNTCEESRDTYGKWHTQLQNMVDTILNGGVK
Ga0211687_103015743	3300020396	Marine	MKDVLIMILKAAMIDMKRRCEQNSDEGSRDTYGKWHGQIKNMVDTIERGGIK
Ga0211636_104129821	3300020400	Marine	HRKFVYCNMKDVLILILEAAMVDMKRRCEQGTYEEDRDLWSKWHGQLKTMVDTIQRGGIK
Ga0211532_101375994	3300020403	Marine	MKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGIIEDMINTIESGGVK
Ga0211659_100375124	3300020404	Marine	MKDVLLLILEAASVDMKRRCEQNSDEESRDTYGKWHGQIVTMIDTIKRGGIK
Ga0211622_100608184	3300020430	Marine	MKDVLILILEAAMVDMKRRCEQGTYEEDRDLWSKWHGQLKTMVDTIQRGGIK
Ga0211576_102003642	3300020438	Marine	MKDVILLILEAVLIDFKRRCEQNSDEESRDTYGKWHGQIKIMIDTIERGGVK
Ga0211473_100038723	3300020451	Marine	MKDVLIHLLTAVKLDFKRRCEQNTDEESRDKYGEWHGIIEDMINTIESGGIK
Ga0211643_100515291	3300020457	Marine	MKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGMIEDMINTIESGGVK
Ga0211676_106986452	3300020463	Marine	MKDLVLVILKGVMIDFKRRCEQNTDEGSRDIYGKWHGQIKTMIDTIENGGVK
Ga0211577_102001991	3300020469	Marine	MKDVLVLILKAAMVDMKRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK
Ga0206677_100107141	3300021085	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKW
Ga0206677_100240035	3300021085	Seawater	MKDSMVLILKGVMLDFKRRCEQNTDEGSRDTYGKWHGQIKEMIDRIENGGVK
Ga0206682_100273575	3300021185	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0213867_100003235	3300021335	Seawater	MKDVLLLILEAVSVDMKRRCEQNSDEQSRDTYGKWHGQIVTMINTIKNGGVK
Ga0206123_100949741	3300021365	Seawater	MKDVLLLILEAASVDIKRRCEQNSDEGSRDTYGKWYGQIKTMIDTIKNGGVK
Ga0213865_102333342	3300021373	Seawater	MKDVLLLILEAASVDLKRRCEQNTCEESRDTYGKWHGQIITMIDTIKNGGVK
Ga0213869_100085636	3300021375	Seawater	MKDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0255755_11247843	3300022909	Salt Marsh	MKDVLLLILEAASVDVKRRCEQNTCEESRDTYGKWHGQIINMIDTIKNGGVK
Ga0233402_10503424	3300024229	Seawater	MKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQI
Ga0244776_102825344	3300024348	Estuarine	MKDVILLILEAVLIDFKRRCEQNSDEESRDTYGKWHGQIKTMIDTIENGGVK
Ga0244776_105353274	3300024348	Estuarine	NMKDVLLLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0208157_11261962	3300025086	Marine	NMKDVLIHLLTAVKLDFKRRCEQNTDEESRDTYGKWHGMIEDMINTIESGGVK
Ga0209336_100598643	3300025137	Marine	MKDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIK
Ga0209645_11723522	3300025151	Marine	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIVTMIDTIKNGGVK
Ga0209716_11525941	3300025626	Pelagic Marine	AAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK
Ga0209194_11206104	3300025632	Pelagic Marine	RWRKVMKDVLLLILEAASVDIKRRCEQNSDEESRDTYGKWHGQIITMINTIKNGGIK
Ga0209198_11771822	3300025640	Pelagic Marine	MKDVLVLILKAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIKXMKNY
Ga0208428_10424604	3300025653	Aqueous	MKDVLLLILEAASVDMKRRCEQNTCEESRDTYGKWHGQIVTMIDTIKNGGIK
Ga0209196_11361953	3300025654	Pelagic Marine	MKDVLVLILKAASVDMKRRCEQNSDEGSRDTYGKWHGQIKKMIDTIENGGIK
Ga0209532_10777284	3300025696	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDIYGKWHGQIKTMIDTIKNGGVK
Ga0209305_10232461	3300025712	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIENGGIK
Ga0209714_11046324	3300025822	Pelagic Marine	MKDVLVLILKAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0209309_102350584	3300025881	Pelagic Marine	KDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0209630_102337973	3300025892	Pelagic Marine	MKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGIK
Ga0209425_101369946	3300025897	Pelagic Marine	SMKDVLLLILEAASVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0209425_103939933	3300025897	Pelagic Marine	MKDVLLLILEAASVDIKRRCEQNSDEESRDTYGKWHGQIKTMIDTIKNGGVK
Ga0209433_100198051	3300027774	Marine	MKDVLIHLLTAVKLDFKRRCEQNTDEASRDTYGKWHGIIEDMINTIESGGIK
Ga0233397_11043914	3300028111	Seawater	DMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0228634_11225614	3300028129	Seawater	LLVLEAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0228613_11497804	3300028279	Seawater	EAAMVDMKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0183755_10014079	3300029448	Marine	MKDVLVLILKAAMVDMKRRCEQNSDEESRDTYGKWHGQIKTMIDTIERGGVK
Ga0315316_101170625	3300032011	Seawater	KRRCEQNTDEGSRDTYGKWHGQIKTMIDTIENGGVK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070147

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences