Scaffold Ga0213869_10001137

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10001137
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20534
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (14.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F056151	Metagenome / Metatranscriptome	138	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000113736	F046070	N/A	MNLKRIKELRNVTHDAQTKMDLISKRIMQGGLSLDQQALHLDNFAANQSRHMLCMEELYKLLKN
Ga0213869_1000113737	F090610	AGAAG	MHKVWRLYLIDNKSITEISKQLNITKNKLKVQYGLK
Ga0213869_1000113738	F101084	N/A	MNKDDLVYEFNDDMWLMYHDGTIDNEDDFYDQKHQWIDNKVIYTHESKQICDKLDYDIFEEHDIFGKANNWSQAAYSAIYDLLNDHNDALDFNEMKLQEQEANA
Ga0213869_1000113742	F048244	N/A	MKVELTQREIDRLYFDLKDYVKVLYNVDRLNELSQDQKEECKIELNLIEKFSKL
Ga0213869_1000113749	F056151	N/A	MSNLKNLKTNHYKTKILNTKKLKFKNNTYLGFNINDLQNIKLKDKLEIENVIEFNLKGLTYINKKYIKNSTLNNI