Scaffold Ga0213869_10000469

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000469
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33349
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F006002	Metagenome / Metatranscriptome	384	Y
F020796	Metagenome / Metatranscriptome	222	Y
F024892	Metagenome / Metatranscriptome	204	Y
F064116	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000046911	F064116	N/A	MKDLLDFKNHRIEALQGKLFDLEQKIGILETYIFELTDKDCPEEYKRIVKNQLLKTD
Ga0213869_1000046913	F001728	N/A	MNDIEMKLTKEDHYRLLLNGVDVTGEQERSVFRHIIQTIDSAIDN
Ga0213869_1000046945	F020796	N/A	MIRETLELLRDKDWLIDDMDINTAKGLYEMPSTFKELRIKTKRKKLTNGR
Ga0213869_1000046948	F006002	N/A	MKAVYCKCKNTYSIKCDKGGKKCKSDEYWKQGIGSIYKETED
Ga0213869_100004696	F024892	N/A	MYCFVSLSMPYKRKKYSSSLHSVEYTDTYTEEMDSEGLTVLKWSMFDSPETLGSGKMFMESEPVFILDEVLKKERINAFVMLGYVSKTYGNKLALPNNSGHRVGKAVKVRCINKIKRFKIIKGLIQYGIERIQVSNEFIYFDTDNYLKEPLFICF