NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213869_10000409

Scaffold Ga0213869_10000409


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000409 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35626
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (69.12%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004404Metagenome / Metatranscriptome439Y
F008387Metagenome334Y
F020461Metagenome224Y
F042019Metagenome / Metatranscriptome159N
F047366Metagenome / Metatranscriptome150N
F087744Metagenome110N
F101497Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000040911F004404GGGGGMNDDSSCDKLNKTIKKFNDYLAKINKEIDLNQHDLKIHYDYDIVPLPDDIINEANRKDK
Ga0213869_1000040912F087744GAGGMSKNILVTFDMQIGDYQHSDKYIFHNKTTDYKYCKQFWSLKKKNKLNEGVYWDNQMLNAISVYSSQEITDQELKTLQKLGVV
Ga0213869_1000040916F042019GGAMSKGEKLILLVSGEVSISPNFLMEDSNFVKQAKKLIKQKLDFDTVKNKLVDWCKNNY
Ga0213869_1000040918F008387AGGMLTIIKWLILLSCSMLGMVILATDPSQQSLGFILTFGCFLLFALDFARNFID
Ga0213869_100004092F101497N/AMTNKGKIIFRIKDLILKCRMKGKFKMAIKLKNILKRITDRS
Ga0213869_100004095F020461GGAMYIDRYKVEIKGNKYHEKTDKKMTDQVLATYESNDGMNIKKLMNVLEELMENHDAHHNISFNIVMKQYDHD
Ga0213869_1000040966F047366N/AMTYSGIFDEIDLKEVKKLKNEIKKLKKIIDDLETHMNLKDFEIQNLKERLKNG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.