NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000174

Scaffold Ga0213869_10000174


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000174 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52067
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (17.07%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F013783Metagenome / Metatranscriptome268Y
F017335Metagenome / Metatranscriptome241Y
F018962Metagenome / Metatranscriptome232Y
F022460Metagenome / Metatranscriptome214Y
F056630Metagenome / Metatranscriptome137Y
F063836Metagenome / Metatranscriptome129Y
F076611Metagenome118Y
F105240Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000017411F017335N/AMNIKSLTLKNKLTIERTGQQYFDLTAPSFRYKTELGVKALHYIKQDQVGRMDKVSLQYFGKSDYVDALCIVNNIFNPFSLNEGDVIIIPNLSDLAAVYSRPNAASRPNPVLEDYVNTDRQSEKDQARIQRLIEKAKTKKSGVDTPIPPNVLQQGQESKIYEGGNITLGANLPIRNNNS
Ga0213869_1000017421F022460N/AMATVKDNRKGFPSLYRATYEEGWLLKNTGYDYAPGLLRNTMSNYMFKNRHLSKFLTEYLNPIMVFYINRVKYLRIYFNFAVPKWYQKIN
Ga0213869_1000017423F105240N/AMAISVTEILGTDSLSGSRLVINDNFNVLTSEINAMEVYFAPAAGTITNLANLSSEALRVGLSTILLDINASTFDILTNVKMTGNLNMTGGGVFRNDTNPVTLDDIGQSMPATINIGTTTAIPPYTINRVGNSDTTNTLTLSLFNGSIGQEIFFVYTTGSGLVTINGVSGNLVLRNNTTGVAVTNLNLNQIGESVHLLCIDNGSGVGVWYVVGGVGYTTT
Ga0213869_1000017426F076611N/AMAEQLLDKASYSLIRTNPKLTANVKVVSDGTDIYLESFSANNRLSSQKFKAFKVDGRATYDQDVFRFFDFGKFPIESAYEVFQEYENTAVLSDYGNQYEMFYCSGTRSIASETYPQSLGTLAPLWLNEQLPNSFVVFRMDNPAAINNYRALTQNENSINAQTSANFTKQVLENCTAIKTFDLTEGTALGSYIRNYRNQENFPEVPLNITWRPDEPILWNGISYKSGGFTSSGNFAYKDLVGKDGTIMENEYLFTQGFQNNGILLANLLNIEFLFDDPTANDYSINRYFGMYVNEVEEGKFDISGEGFYKNTEKSQLPNINTITEVSQYLNTPFEMTNEEGILLFLDPTKTTTVTGLPTPTRVDEVESIFYVKDKEDDYHTIKKGSLWSKDQIRLFDTKVDISLFAGYKEPDTFANASIVQHAGFAQMYIKILDNIEDGFSITFYDGVDVVGKIFANSVLAPTPGKSFEAFFNPNGTIQEVAQSITSAINNGINENSRFFTASYNDSTVYVKSRFSGTRFNRMGFELDAQYPEVFSQIQTYPTTTIAKPSQTFVGGNDTKNSLLKVEQGDQDRFIKGNFVQTTGDFAQIGDWVPYTEEPIYDGFDNIIGYNNIDKYVIITCNDNQIMVTGSNQVALYSDYRPSFGRFSFFDVKDFDVDFYSTLYSQEGELDFEYAEYNQSSPGSNPPQYIGISSNPEIRSFYDNGGFYNLIGLLNDAEDQNPDDEYILSEYIRLEENFLTSQATISRIAPYINKWAWINNGKDVRNHPYRLNVNLAFGLNNFAPSKYDKIQEASGFTHEWYYLSEFPTYFTKSAIESSWSYIDTAPVDNTAANLITGQKFVPGTFQNVNRNYFDEYFIVEKFTTGGITEIDRQLRYGRFSGGDEQNFSETFLRGVRVTVKEKAIGTEKPNFDTASLSYVTNGTFNDYRFSAILVPNLPDKPESQVKFIKNEKWKTVTMLISVDYDEACFNNINKSTIDRTTLYSLNSSYVTNTDCSPVKDPATGSFDYTDGTLRGALSFNLSSQNSITGIYTIKGLPNSAGQPTDFINDIRILEDGTYGTITFSIAGINYVVSGISKVLSSDKFQCSKVTANGLSVNLPSIIPSQANLGTATYTIQDSGYLEYQNRLLSIGFGEIFDAVNDGNPNVIYETVKADGTQARNSDGTLAQTFNITLRAQADILKSLYVGILPDPNKPTEFNLTDVIGYDLSLQRVPNVTPIARHAGYYEPYSLPLIFFRDPYMNIDFNETVTGGTTGSNNIPDAAYKLKVLELCKYKNTQFNSSDPNFGQIQNFFYHKVNEQDPSTILELSNDSAFSSLYPLINEVGIDYKDFYMFSSNWEPSYFIKSIDKTLIENIIGTRSMKERKSFFGSKYLKVPESIILDTFQPDPFVKRAIRQPSLIPGTFMYQDTPSVTVNKKVIKSLGTTQINSIKKQSSSATVAFYLFIEKRLVEYLFEPIKKEFLKYVNPLYGFGDLETLDDDVRQYIRQNILKLYKVGNVDFYNLASRENEPDVYTTAELTNLQKTAAGLSINDNVSSKTLNTNPFDLRLIYNKRTGFSESYGFSVTIVKK
Ga0213869_100001743F013783N/AVILEAVTFKLALDFFIFLKKNRITCTSIKVDFFDRVKHEYIDFADVAAMQAYYNKNYIPIDNCFLGDLVSIQFFLAESELYDFTTEFRAIDVTNKFTLETGSAYDRQRNAGRKVLIDRQIQLIKNAVTDYVKYWRELKYIYITGIYSPCYAEPGWSENTWWLKSFREAFTTSRDTSQFPYSDITIVENPPK
Ga0213869_1000017438F063836N/AMSLKNYNNFVSEEVDDFYKDLENSNKRLKLFSTFNKSELTNVKTNFSITEVPKKKFQPKVKGYKKINKDKGIF
Ga0213869_100001745F056630N/AMQKDNIEETPQEVHENKYWQWVKGEKSGDVVTIKNIDDKWINFNEGGRLSKDLQNEFIQQLDSDIAGEFVSSTNNTGPLNTGGAIIPNNTQPIEILEKVKSPIRILFDKQKKNNKVKLLLEFPVNIPTKGVYELMSTSFDEKEVNEQLKSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0213869_100001747F018962N/AMIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQFSYIKRFFFDLCDDIGLEPGSKFDKNVLDINTRWGTHFEPTVKDIEFKIKSLKNELKELEEWKKNI
Ga0213869_100001748F008190AGGAMEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAINRNISTTIFYVLGNLNTETVGGIQSYVESLSSKPITYKIYHSPDIMVNGTAELFDDIIEFE
Ga0213869_100001749F004606N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKADDYKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIREISARPFFKGPLSLDSIKEFDARYKKGWLDKFEKGDLNIDKYLDSLS
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Institute for Fundamental Biomedical Research
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