NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10028736

Scaffold Ga0213865_10028736


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10028736 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3123
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F032867Metagenome / Metatranscriptome179Y
F047975Metagenome / Metatranscriptome149Y
F054777Metagenome / Metatranscriptome139N
F059345Metagenome134Y
F087019Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1002873610F047975AGGAGMIDMTKEEWAENTVDDMDWKDLARIAYDVMLDSVKDMSDKEFQEYLIECGYDED
Ga0213865_1002873613F054777AGGAGGMSNKINDETFERLYDDVLADDERGLLEDKIRDMVLRHGLHADDDRDEILQLIAEDEFYEQFT
Ga0213865_1002873614F059345AGGAGMSMTKEKLESIHCALQELQQEFNIPDDNLHLEDAYKFTEDLREEHFNKRREL
Ga0213865_100287362F087019GAGGMIGELIGLALVIGFMLVSLTAVGFIIADRNYDNKKKND
Ga0213865_100287363F003051N/AMKTKILKSKVTIEMSNEEYDTMFKYIDKLRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYRYVKRGSK
Ga0213865_100287367F010532GGAGMGRTRKYIYRRLGLSGGIELMNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGIGMDEQFITGA
Ga0213865_100287368F010318GAGGMNVDSDKPKYLECIYEAPITFNLEELGIDWDNIKNYHVKYGTLYVEFKDGNSGQYDGDIGDPDYKWAEQESIFTEDWDLVEGLN
Ga0213865_100287369F032867GAGGMDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDEC
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